1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATCGACCCCAGCGGCTCCTACTTTGCCTGGAAGGCCTCGGCCATTGGCAAGAACATGACCAACGCCAAGGCCTTCCTGGAGAAGCGCTACAGCGACGAGgtgagccggcatggcgggtggaggaatgtgcactgcagggggttgacggggtcagtggtcagggagcaatcgtcttagatgccacatccagcgtgctcgacagcgtgccacccgttcgggtcatttgcatgaccacgtcagcaactaccgccctgactgacttgcgtgtgcccccggacatttcctctccgccctgcag
species | Chlamydomonas reinhardtii |
transcript | EDO97600 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAACATGACCAACGCCAAGGCCTTCCTGGAGAAGCGCTACAGCGACGAG GTGGGCATTGAGGACGCGGTGCACACGGCGCTGCTGACGCTCEST: gi|161791279|gb|FC081178.1|FC081178
genomic: AGAACATGACCAACGCCAAGGCCTTCCTGGAGAAGCGCTACAGCGACGAGgtgagccggc ... cgccctgcagGTGGGCATTGAGGACGCGGTGCACACGGCGCTGCTGACGCTC
EST: AGAACATGACCAACGCCAAGGCCTTCCTGGAGAAGCGCTACAGCGACGAG GTGGGCATTGAGGACGCGGTGCACACGGCGCTGCTGACGCTCAAGGAAGGCEST: gi|161792152|gb|FC077220.1|FC077220
genomic: AGAACATGACCAACGCCAAGGCCTTCCTGGAGAAGCGCTACAGCGACGAGgtgagccggc ... cgccctgcagGTGGGCATTGAGGACGCGGTGCACACGGCGCTGCTGACGCTCAAGGAAGGC
EST: AGAACATGACCAACGCCAAGGCCTTCCTGGAGAAGCGCTACAGCGACGAG GTGGGCATTGAGGACGCGGTGCACACGGCGCTGCTGACGCTCAAGGAAGGC
genomic: AGAACATGACCAACGCCAAGGCCTTCCTGGAGAAGCGCTACAGCGACGAGgtgagccggc ... cgccctgcagGTGGGCATTGAGGACGCGGTGCACACGGCGCTGCTGACGCTCAAGGAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCGACCCCAGCGGCTCCTACTTTGCCTGGAAGGCCTCGGCCATTGGCAAGAACATGACCAACGCCAAGGCCTTCCTGGAGAAGCGCTACAGCGACGAGgtgagccggcatggcgggtggaggaatgtgcactgcagggggttgacggggtcagtggtcagggagcaatcgtcttagatgccacatccagcgtgctcgacagcgtgccacccgttcgggtcatttgcatgaccacgtcagcaactaccgccctgactgacttgcgtgtgcccccggacatttcctctccgccctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC