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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGCTCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctagcatcgcgacatcggcttcattttggaccacttcttaaggtcttgtttcctttctgtcgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96600
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10779798|gb|AV636478.1|AV636478
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|49467422|gb|BP095335.1|BP095335
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|10778347|gb|AV635027.1|AV635027
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|15694356|gb|BI718661.1|BI718661
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|161796597|gb|FC082914.1|FC082914
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|10771327|gb|AV622150.1|AV622150
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|8933046|gb|BE227807.1|BE227807
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|10776378|gb|AV633058.1|AV633058
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|10778045|gb|AV634725.1|AV634725
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|22063901|gb|BQ815490.1|BQ815490
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|16432961|gb|BI998187.1|BI998187
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|6546326|gb|AV392110.1|AV392110
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|10777853|gb|AV634533.1|AV634533
EST:     GGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: GGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|22073092|gb|BQ822430.1|BQ822430
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|15697029|gb|BI721334.1|BI721334
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
EST: gi|16430540|gb|BI995766.1|BI995766
EST:     TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCG                         GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC
genomic: TCATTGGCGACTCCGGTGTTGGCAAGTCTTGCCTGCTCCTTCGTTTCGCGgtaagtctag ... tgtcgcgcagGATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC