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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGCTATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcgggctgcaactgcttagcagttgccagcactgttaagccatgcttgtcatttggtgtttgttctgtgcgctgcccaaaatgcaccttgccacgtcacccgcctcgccttctctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96521
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34985415|gb|CF559332.1|CF559332
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34989570|gb|CF563487.1|CF563487
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34990626|gb|CF564543.1|CF564543
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|8932864|gb|BE227625.1|BE227625
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34993723|gb|CF567640.1|CF567640
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34990415|gb|CF564332.1|CF564332
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34989267|gb|CF563184.1|CF563184
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|15701769|gb|BI726074.1|BI726074
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34993288|gb|CF567205.1|CF567205
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34989651|gb|CF563568.1|CF563568
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|15703706|gb|BI728011.1|BI728011
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|16432459|gb|BI997685.1|BI997685
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34991369|gb|CF565286.1|CF565286
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34993942|gb|CF567859.1|CF567859
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34982454|gb|CF556371.1|CF556371
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|22056996|gb|BQ812469.1|BQ812469
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCC-CCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34990412|gb|CF564329.1|CF564329
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|16071488|gb|BI873484.1|BI873484
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|16072230|gb|BI874226.1|BI874226
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34983474|gb|CF557391.1|CF557391
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|16436197|gb|BM001417.1|BM001417
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|15371758|gb|BI531184.1|BI531184
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34989650|gb|CF563567.1|CF563567
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34989571|gb|CF563488.1|CF563488
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34983476|gb|CF557393.1|CF557393
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34983404|gb|CF557321.1|CF557321
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAC
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34982455|gb|CF556372.1|CF556372
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|16437782|gb|BM003002.1|BM003002
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34990627|gb|CF564544.1|CF564544
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34993509|gb|CF567426.1|CF567426
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|22068678|gb|BQ818509.1|BQ818509
EST:     CAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: CAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34992412|gb|CF566329.1|CF566329
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34983403|gb|CF557320.1|CF557320
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|15696361|gb|BI720666.1|BI720666
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34989572|gb|CF563489.1|CF563489
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34985416|gb|CF559333.1|CF559333
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34981552|gb|CF555469.1|CF555469
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
EST: gi|34990625|gb|CF564542.1|CF564542
EST:     ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCA                         AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG
genomic: ATCCAGACAAGCCGCCCAGGGTTCGCTTCAGCAGCGAAATGTTCCACCCAgtgagttgcg ... ttctctgcagAATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG