1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
CGTGAAGGAGGAGGTGTCGACCCGCAAGCGCATGCTGCTGGTGCAGGCCGTGTCGCAGTTCCGCCAGCGCCGCGTGAACGAGGCGGTGGTGTCGCTGCAGgtgggcgggcgtggggtggtgtgggcggggtggggtggtgtgatctgggcgggcgggtgggcgggtaggtgggaaggtgggtggggtttggtcaggcagg...
species | Chlamydomonas reinhardtii |
transcript | EDP08017 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: TGTCGCAGTTCCGTCAGCGCCGCGTGAACGAGGCGGTGGTGTCGCTGCAG AACCTGCTCAGCTGCCTGGCGCTCATGCCCGAGGACAAGCCCATGCCGTGGEST: gi|6551429|gb|AV397213.1|AV397213
genomic: TGTCGCAGTTCCGCCAGCGCCGCGTGAACGAGGCGGTGGTGTCGCTGCAGgtgggcgggc ... ctccccacagAACCTGCTCAGCTGCCTGGCGCTCATGCCCGAGGACAAGCCCATGCCGTGG
EST: TGTCGCAGTTCCGCCAGCGCCGCGTGAACGAGGCGGTGGTGTCGCTGCAG AACCTGATCAGCTGCCTGGCGCTCATGCCCGAGGACAAGCCCATGCACGTG
genomic: TGTCGCAGTTCCGCCAGCGCCGCGTGAACGAGGCGGTGGTGTCGCTGCAGgtgggcgggc ... ctccccacagAACCTGCTCAGCTGCCTGGCGCTCATGCCCGAGGACAAGCCCATGC-CGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGAAGGAGGAGGTGTCGACCCGCAAGCGCATGCTGCTGGTGCAGGCCGTGTCGCAGTTCCGCCAGCGCCGCGTGAACGAGGCGGTGGTGTCGCTGCAGgtgggcgggcgtggggtggtgtgggcggggtggggtggtgtgatctgggcgggcgggtgggcgggtaggtgggaaggtgggtggggtttggtcaggcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttggt