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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggggttcatgcacccgtgactagtaccccaggcggccaggccccgcactatccgcccaagcataccaggccttgcacggtgcgcgggctcggctctctctctctcccctgttgccctgtgtttctcatccgtgttccccactttccatctcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09734
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8932818|gb|BE227579.1|BE227579
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCT
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCT
EST: gi|15370392|gb|BI529818.1|BI529818
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
EST: gi|9027815|gb|BE237855.1|BE237855
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
EST: gi|22063169|gb|BQ815100.1|BQ815100
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
EST: gi|8287304|gb|BE024863.1|BE024863
EST:     GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAG                         GATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG
genomic: GCTTCCACATCGCCCACAACACCAAGGCGGTGCCCCTAGAGAAGATCCAGgtgagccggg ... catctcacagGATGTGCAACTTTCGGAGGATTGCTGCCTGACCATGTTCTCGCTCAAGCAG