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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGCTCTGGCCGTTCGTGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtgggatgggagcgcaggttggggctaggccgtgggggtcagtaagcagggccagccacgttgggcgcgtaggcagggggtttcaccgggcgtga...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09617
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15696610|gb|BI720915.1|BI720915
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|8514425|gb|BE122320.1|BE122320
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|10771406|gb|AV622229.1|AV622229
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCCCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|161813771|gb|FC104475.1|FC104475
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|161818190|gb|FC101896.1|FC101896
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|161792760|gb|FC080701.1|FC080701
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|15697532|gb|BI721837.1|BI721837
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|16432720|gb|BI997946.1|BI997946
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|10770507|gb|AV621332.1|AV621332
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|23362117|gb|BU649937.1|BU649937
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
EST: gi|14232374|gb|BG851190.1|BG851190
EST:     TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGG                         GCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT
genomic: TGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtggg ... cttgtaccagGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCGCTCTGGCCGTTCGTGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTCCACTACACGGgtgcggtgggatgggagcgcaggttggggctaggccgtgggggtcagtaagcagggccagccacgttgggcgcgtaggcagggggtttcaccgggcgtga

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