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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatgttgcaagctgagggaagaggggacgtttgactgttgcatccgccaacgctttacctgccaccgcctggaccccgcccaccactccag

Basic information

species Chlamydomonas reinhardtii
transcript EDP08044
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8513574|gb|BE121469.1|BE121469
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|22060218|gb|BQ813721.1|BQ813721
EST:     AGGGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: AGGGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|23362006|gb|BU649826.1|BU649826
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|22076284|gb|BQ825060.1|BQ825060
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|22076189|gb|BQ824965.1|BQ824965
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|22071318|gb|BQ820656.1|BQ820656
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|161823557|gb|FC108518.1|FC108518
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCCAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTTTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|10776698|gb|AV633378.1|AV633378
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|10774475|gb|AV625298.1|AV625298
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|6544068|gb|AV389852.1|AV389852
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|8286991|gb|BE024550.1|BE024550
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|15703387|gb|BI727692.1|BI727692
EST:     TGAAGAAGGGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: TGAAGAAGGGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|22071317|gb|BQ820655.1|BQ820655
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|161799533|gb|FC086094.1|FC086094
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCCAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTTTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|161814940|gb|FC103967.1|FC103967
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCCAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTTTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
EST: gi|10127248|gb|BE725952.1|BE725952
EST:     GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAG                         GTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC
genomic: GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatg ... accactccagGTGGCCGAGACGCTGCCCGCCGAGGTTCTGGAGAAGATGCACGCTCCCCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGTGGAGCAGGTGGAGGGCGTGGAGGCAAAGATTTGGCAGgtgcgcaatgttgcaagctgagggaagaggggacgtttgactgttgcatccgccaacgctttacctgccaccgcctggaccccgcccaccactccag

-  GTGGAG
- -  GGAGCA
- - - GAGCAG
- - - - -  GGTGGA
- - - - - - GTGGAG
- - - - - -  TGGAGG
- - - - - - - - - -  GTGGAG
- - - - - - - - - - - TGGAGG
- - - - - - - - - - - - -  GCAAAG