1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCGCTGATGAGCTGACAGCCGCCAACCGCAACGCACCTGAATTTCACGGGGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGTgtaagtagcatgggtcgtgttcacgcggggccgtgcaaacgatggtgtactgcctcagacgcctgcttaattaccgtatgcgcctagtgtaatcaattaa...
species | Chlamydomonas reinhardtii |
transcript | EDP07873 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGT GGAGCCACGGTGGGAGCCACGTGGAGGTGGAGGGCTCGTTTGACAACTGGAEST: gi|10768518|gb|AV619343.1|AV619343
genomic: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGTgtaagtagca ... acacgcgcagGGAGCCACGGTGGGAGCCACGTGGAGGTGGAGGGCTCGTTTGACAACTGGA
EST: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGT GGAGCCACGGTGGGAGCCACGTGGAGGTGGAGGGCTCGTTTGACAACTGGAEST: gi|10777740|gb|AV634420.1|AV634420
genomic: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGTgtaagtagca ... acacgcgcagGGAGCCACGGTGGGAGCCACGTGGAGGTGGAGGGCTCGTTTGACAACTGGA
EST: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGT GGAGCCACGGTGGGAGEST: gi|15910726|gb|BI816493.1|BI816493
genomic: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGTgtaagtagca ... acacgcgcagGGAGCCACGGTGGGAG
EST: NGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGT GGAGCCACGGTGGGAGCCACGTGGAGGTGGAGGGGCTCGTTTGACAACTGGEST: gi|10770239|gb|AV621064.1|AV621064
genomic: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGTgtaagtagca ... acacgcgcagGGAGCCACGGTGGGAGCCACGTGGAGGTGGAGGG-CTCGTTTGACAACTGG
EST: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGT GGAGCCACGGTGGGAGCCACGTGGAGGTGGAGGGCTCGTTEST: gi|10772066|gb|AV622889.1|AV622889
genomic: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGTgtaagtagca ... acacgcgcagGGAGCCACGGTGGGAGCCACGTGGAGGTGGAGGGCTCGTT
EST: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGT GGAGCCACGGTGGGAGC
genomic: GGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGTgtaagtagca ... acacgcgcagGGAGCCACGGTGGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGCTGATGAGCTGACAGCCGCCAACCGCAACGCACCTGAATTTCACGGGGTGGCAGGGTGGCCAGCGCAGCCAAAGCTGATGCCAGTGGTCATCGTGTgtaagtagcatgggtcgtgttcacgcggggccgtgcaaacgatggtgtactgcctcagacgcctgcttaattaccgtatgcgcctagtgtaatcaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgtaa