1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCTACAAGAAATGCGAAGACGTTCCGGCCGCGCAAGAACACGCCTGTGGGAAGCAAGgtaggagcgacgcagggctggacgaaagtgcagcgtgcccgcttccgcggcctgtgcgccatgcgcctcagccaattgatgcacgctactgatggaaattggtttgacctctgtag
species | Chlamydomonas reinhardtii |
transcript | EDP07654 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAATGCGAAGACGTTCCGGCCGCGCAAGAACACGCCTGTGGGAAGCAAG GGCCTGCAACTCAAGCGGCACATCGATGCATCNT-TGGGCAGTGGCAACATEST: gi|6542989|gb|AV388773.1|AV388773
genomic: GAAATGCGAAGACGTTCCGGCCGCGCAAGAACACGCCTGTGGGAAGCAAGgtaggagcga ... acctctgtagGGCCTGCAACTCAAGCGGCACATCGATGCAAC-TCTGGGCAGTGGCAACAT
EST: GAAATGCGAAGACGTTCCGGCCGCGCAAGAACACGCCTGTGGGAAGCAAG GGCCTGCAACTCAAGCGGCACATCGATGCAACTCTGGGCAGTGGCAACATCEST: gi|9028072|gb|BE238112.1|BE238112
genomic: GAAATGCGAAGACGTTCCGGCCGCGCAAGAACACGCCTGTGGGAAGCAAGgtaggagcga ... acctctgtagGGCCTGCAACTCAAGCGGCACATCGATGCAACTCTGGGCAGTGGCAACATC
EST: CGCCTGTGGGAAGCAAG GGCCTGCAACTCAAGCGGCACATCGATGCAACTCTGGGCAGTGGCAACATCEST: gi|22055627|gb|BQ811935.1|BQ811935
genomic: CGCCTGTGGGAAGCAAGgtaggagcga ... acctctgtagGGCCTGCAACTCAAGCGGCACATCGATGCAACTCTGGGCAGTGGCAACATC
EST: GAAATGCGAAGACGTTCCGGCCGCGCAAGAACACGCCTGTGGGAAGCAAG GGCCTGCAACTCAAGCGGCACATCGATGCAACTCTGGGCAGTGGCAACATC
genomic: GAAATGCGAAGACGTTCCGGCCGCGCAAGAACACGCCTGTGGGAAGCAAGgtaggagcga ... acctctgtagGGCCTGCAACTCAAGCGGCACATCGATGCAACTCTGGGCAGTGGCAACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTACAAGAAATGCGAAGACGTTCCGGCCGCGCAAGAACACGCCTGTGGGAAGCAAGgtaggagcgacgcagggctggacgaaagtgcagcgtgcccgcttccgcggcctgtgcgccatgcgcctcagccaattgatgcacgctactgatggaaattggtttgacctctgtag
- - - - - - - CGAAGA
- - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG