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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACATTATGGTGCCATGGTTTGAGCGGCCCGTGCTTTACGATGTGCGCGCCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgggcgacgggaaattgcatagatctagcaccttccaacaattaatgcgaacagaagtatggaaaaggtcgcgtggtatggttttatag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06728
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7615357|gb|AW720803.1|AW720803
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22059211|gb|BQ813316.1|BQ813316
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22063534|gb|BQ815265.1|BQ815265
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|10768806|gb|AV619631.1|AV619631
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|161814815|gb|FC100657.1|FC100657
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22072634|gb|BQ821972.1|BQ821972
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22050250|gb|BQ809141.1|BQ809141
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22068051|gb|BQ818019.1|BQ818019
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22055652|gb|BQ811951.1|BQ811951
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22050251|gb|BQ809142.1|BQ809142
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|10779232|gb|AV635912.1|AV635912
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|10780162|gb|AV636842.1|AV636842
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|15696927|gb|BI721232.1|BI721232
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|15369591|gb|BI529017.1|BI529017
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|161821633|gb|FC108134.1|FC108134
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22067190|gb|BQ817392.1|BQ817392
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22064606|gb|BQ815890.1|BQ815890
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22070334|gb|BQ819715.1|BQ819715
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22049281|gb|BQ808712.1|BQ808712
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACG
EST: gi|22073537|gb|BQ822875.1|BQ822875
EST:     CCCGGCCCAGCGTCATCCAGGGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22074365|gb|BQ823420.1|BQ823420
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|23364284|gb|BU652104.1|BU652104
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|161801894|gb|FC090730.1|FC090730
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
EST: gi|22071207|gb|BQ820545.1|BQ820545
EST:     CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATG                         GTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG
genomic: CCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgg ... ggttttatagGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACATTATGGTGCCATGGTTTGAGCGGCCCGTGCTTTACGATGTGCGCGCCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGACCTGCAGATGgtacgcttgggcgacgggaaattgcatagatctagcaccttccaacaattaatgcgaacagaagtatggaaaaggtcgcgtggtatggttttatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG