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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGCTGTACTTCCTGCTGGCGCGCATGGTGCTGGAGATGCGTGACCAGATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgcaaaagctgcctagctaatgactgtttgtgtacatgttttgtactgtgccgggaagaggggaaaggatacacgggagtaggccacaccaga...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06264
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369788|gb|BI529214.1|BI529214
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: gi|16072338|gb|BI874334.1|BI874334
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: gi|15369510|gb|BI528936.1|BI528936
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: gi|10778959|gb|AV635639.1|AV635639
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGG
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGG
EST: gi|7687333|gb|AW757981.1|AW757981
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAG
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAG
EST: gi|6541255|gb|AV387039.1|AV387039
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGA
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGA
EST: gi|161800463|gb|FC083644.1|FC083644
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: gi|161792204|gb|FC077545.1|FC077545
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGC
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGC
EST: gi|34988741|gb|CF562658.1|CF562658
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGACGAGGCCAAGGAGGCCG
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCG
EST: gi|15372809|gb|BI532235.1|BI532235
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGA
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGA
EST: gi|34994107|gb|CF568024.1|CF568024
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: gi|14228070|gb|BG846886.1|BG846886
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: gi|22070278|gb|BQ819675.1|BQ819675
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGGCCAAGGAGGCCGGCGAGGAGGAGACCTTCGAGGCGGA
EST: gi|34989159|gb|CF563076.1|CF563076
EST:     ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAG                         GAAGCCCGAGGAGG
genomic: ATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgc ... cggttcttagGGAGCCCGAGGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTGCTGTACTTCCTGCTGGCGCGCATGGTGCTGGAGATGCGTGACCAGATCAACGTGACCAACCCCTGGTCCGTCCCCGTGGACCTGTTCTTCTACAGgtgcgctcgcaaaagctgcctagctaatgactgtttgtgtacatgttttgtactgtgccgggaagaggggaaaggatacacgggagtaggccacaccaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcaaaa
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