1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTGGAGAACAGCGTGTGCGTGCCGAATGCGGTCGACGTGATCGGCACAAGCGTGTACGCCTGCTTCAAGGAGTTCCGCATCGATGTTGTTGGTTGCGACgtaagtcatgctggggtcgatcggtggcacctgaccccgcagccggggctgcagcttgctggttgggcacggccgggtcgtgtcccgcttcaacaggacctgcgcacatcgccgctgcgccacttttttcctcgggcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05908 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGTGTACGCCTGCTTCAAGGAGTTCCGCATCGATGTCGTGGGTTGCGAC GTTACCATGCGCGCCGACGGGGACCTTTACGCGGGACCGGGCCGCCTGCCAEST: gi|10783810|gb|AV640482.1|AV640482
genomic: GCGTGTACGCCTGCTTCAAGGAGTTCCGCATCGATGTTGTTGGTTGCGACgtaagtcatg ... tcgggcgcagGTTACCATGCGCGCCGACGGGGACCTTTACGCGGGACCGGGCCGCCTGCCA
EST: GCGTGTACGCCTGCTTCAAGGAGTTCCGCATCGATGTTGTTGGTTGCGAC GTTACCATGCGCGCCGACGGGGACCTTTACGCGGGACCGGGCCGCCTGCCAEST: gi|49469512|gb|BP097373.1|BP097373
genomic: GCGTGTACGCCTGCTTCAAGGAGTTCCGCATCGATGTTGTTGGTTGCGACgtaagtcatg ... tcgggcgcagGTTACCATGCGCGCCGACGGGGACCTTTACGCGGGACCGGGCCGCCTGCCA
EST: GCGTGTACGCCTGCTTCAAGGAGTTCCGCATCGATGTTGTTGGTTGCGAC GTTACCATGCGCGCCGACGGGGACCTTTACGCGGGACCGGGCCGCCTGCCA
genomic: GCGTGTACGCCTGCTTCAAGGAGTTCCGCATCGATGTTGTTGGTTGCGACgtaagtcatg ... tcgggcgcagGTTACCATGCGCGCCGACGGGGACCTTTACGCGGGACCGGGCCGCCTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGAGAACAGCGTGTGCGTGCCGAATGCGGTCGACGTGATCGGCACAAGCGTGTACGCCTGCTTCAAGGAGTTCCGCATCGATGTTGTTGGTTGCGACgtaagtcatgctggggtcgatcggtggcacctgaccccgcagccggggctgcagcttgctggttgggcacggccgggtcgtgtcccgcttcaacaggacctgcgcacatcgccgctgcgccacttttttcctcgggcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG