Sequence
atgc intronic sequence ATGC exonic sequenceCGCGCTGGCCAAGGAGAAGTCGCCCTGCATCATCTTCATTGATGAGATTGACGCCATCGGCACCAAGCGCTTCGACTCCGAGCTGTCGGGAGACCGCGAGgtgggagctttgggaggttcggcgcaggattgggaaacgtgtgttacaaggacagactcgcgacgcacacatgcgtgtaccgggtgagcgcgctgcgcca...
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP05634 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EDP05634 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 5'ss of exon 6
----------------------CGCGCTGGCCAAGGAGAAGTCGCCCTGCATCATCTTCATTGATGAGATTGACGCCATCGGCACCAAGCGCTTCGACTCCGAGCTGTCGGGAGACCGCGAGgtgggagctttgggaggttcggcgcaggattgggaaacgtgtgttacaa---ggacagactcgc---gacgcacacatgcgtgtaccgggtgagcgcgctgcgcca-----------
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CAAAGCTGGTTCGGGATGCTTTTCAGCTTGCTAAGGAGAAAGCTCCCTGCATCATTTTCATTGATGAGATTGATGCCATTGGGACTAAGAGGTTTGACA--GgtatgtatgtctcacatgatttttatcccctggaatttttcctacattgtttcaaattctataatataatcaaaacattcttattgaaaaaaatatattcttattgttaacaagcattttgctttattctatgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15693106|gb|BI717411.1|BI717411EST: ACGCCATCGGCACCAAGCGCTTCGACTCCGAGCTGTCGGGAGACCGCGAG GTCCAGCGCACCATGCTGGAGCTGCTCAACCAGCTGGACGGCTTCAGCAG
genomic: ACGCCATCGGCACCAAGCGCTTCGACTCCGAGCTGTCGGGAGACCGCGAGgtgggagctt ... aaccctgcagGTCCAGCGCACCATGCTGGAGCTGCTCAACCAGCTGGACGGCTTCAGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCGCTGGCCAAGGAGAAGTCGCCCTGCATCATCTTCATTGATGAGATTGACGCCATCGGCACCAAGCGCTTCGACTCCGAGCTGTCGGGAGACCGCGAGgtgggagctttgggaggttcggcgcaggattgggaaacgtgtgttacaaggacagactcgcgacgcacacatgcgtgtaccgggtgagcgcgctgcgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgt