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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggcgccggtggcgcgcaagcgaaagcgtggccggcagcttctataagcaataggagggaatgcaaagaactgaaatttatggcctgcggtgcacggggtcgagtggtgcccggagctggcaatgcgcccgtgggaatcttgcttgagcgctggtattggctgtttgggtgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05500
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34988161|gb|CF562078.1|CF562078
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34988803|gb|CF562720.1|CF562720
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993857|gb|CF567774.1|CF567774
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34989394|gb|CF563311.1|CF563311
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10783401|gb|AV640073.1|AV640073
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993622|gb|CF567539.1|CF567539
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34989393|gb|CF563310.1|CF563310
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCCCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34983424|gb|CF557341.1|CF557341
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10789573|gb|AV645302.1|AV645302
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10125832|gb|BE724536.1|BE724536
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34988802|gb|CF562719.1|CF562719
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993422|gb|CF567339.1|CF567339
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34986739|gb|CF560656.1|CF560656
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993148|gb|CF567065.1|CF567065
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34992624|gb|CF566541.1|CF566541
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|15372414|gb|BI531840.1|BI531840
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34987662|gb|CF561579.1|CF561579
EST:     AACTAAATATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|34993615|gb|CF567532.1|CF567532
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10788274|gb|AV644946.1|AV644946
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|6544748|gb|AV390532.1|AV390532
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10786077|gb|AV642749.1|AV642749
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
EST: gi|10788170|gb|AV644842.1|AV644842
EST:     AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAG                         GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG
genomic: AGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGCTCGCGTGGCCAGgtgcgtcggc ... gggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATG