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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATGgtaggcgaggggagcaggggactctagtggggcgagcaaacgtgcaagggatgcaccgccctctgtcagggtgtggtacacaccggtagcaggcggtatacgtgcctgcagctagcagcgccgcgttgttggcatggtgtggcaagtaacatgcacgggttggctcgtgacccaacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05450
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15695028|gb|BI719349.1|BI719349
EST:     GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATG                         GTGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT
genomic: GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATGgtaggcgagg ... gacccaacagGTGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT
EST: gi|14226210|gb|BG845026.1|BG845026
EST:     GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGCCAAGATG                         GTGTGCACNGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT
genomic: GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATGgtaggcgagg ... gacccaacagGTGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT
EST: gi|15698255|gb|BI722560.1|BI722560
EST:     GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATG                         GTGTGCACGGGCGCCAAGAGCGAGGATGAC
genomic: GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATGgtaggcgagg ... gacccaacagGTGTGCACGGGCGCCAAGAGCGAGGATGAC
EST: gi|14226211|gb|BG845027.1|BG845027
EST:     GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATG                         GTGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT
genomic: GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATGgtaggcgagg ... gacccaacagGTGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT
EST: gi|15368028|gb|BI527454.1|BI527454
EST:     GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATG                         GTGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT
genomic: GCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATGgtaggcgagg ... gacccaacagGTGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTCATCTTCGCCTCTGGCAAGATGgtaggcgaggggagcaggggactctagtggggcgagcaaacgtgcaagggatgcaccgccctctgtcagggtgtggtacacaccggtagcaggcggtatacgtgcctgcagctagcagcgccgcgttgttggcatggtgtggcaagtaacatgcacgggttggctcgtgacccaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG