1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGACTCCTCCGATTGTGGCGGACAGCATGGCGGCGCTGCAGGGACGGCAGGACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAGgtgcgggcccgctcaagcactagcacaggagccggctaagctgcaagtcgacccgcagggcgacctgcgggccttgaacctcgggcacgatgggtgtgca...
species | Chlamydomonas reinhardtii |
transcript | EDP05424 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAG -CTTGGCGTTGGGGAGAGAGGAGCTGATGGAGTCACTGCGATCAGACCCACEST: gi|10774755|gb|AV625578.1|AV625578
genomic: GACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAGgtgcgggccc ... gtttgcatagGCTTG-CGTTGGGGAGAGAGGAGCTGATGGAGTCACTGCGATCAGACCCAC
EST: GACGTCATCTGCGTGCCGCGGGGCGGCTACGCACAGGCGGAGCGCTGCAG GCTTGCGTTGGGGAGAGAGGAGCTGATGGAEST: gi|14232624|gb|BG851440.1|BG851440
genomic: GACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAGgtgcgggccc ... gtttgcatagGCTTGCGTTGGGGAGAGAGGAGCTGATGGA
EST: GACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAG GCTTGCGTTGGGGAGAGAGGAGCTGATGGAGTCACTGCGATCAGACCCACAEST: gi|14232623|gb|BG851439.1|BG851439
genomic: GACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAGgtgcgggccc ... gtttgcatagGCTTGCGTTGGGGAGAGAGGAGCTGATGGAGTCACTGCGATCAGACCCACA
EST: GACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAG GCTTGCGTTGGGGAGAGAGGAGCTGATGGAGTCACTGCGATCAGACCCACAEST: gi|16430728|gb|BI995954.1|BI995954
genomic: GACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAGgtgcgggccc ... gtttgcatagGCTTGCGTTGGGGAGAGAGGAGCTGATGGAGTCACTGCGATCAGACCCACA
EST: GACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAG GCTTGCGTTGGGGAGAGAGGAGCTGATGGAGTCACTGCGATCAGACCCACA
genomic: GACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAGgtgcgggccc ... gtttgcatagGCTTGCGTTGGGGAGAGAGGAGCTGATGGAGTCACTGCGATCAGACCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACTCCTCCGATTGTGGCGGACAGCATGGCGGCGCTGCAGGGACGGCAGGACGTCATCTGCGTGCCGTGGGGCGGCTACGCACAGGCGGAGCGCTGCAGgtgcgggcccgctcaagcactagcacaggagccggctaagctgcaagtcgacccgcagggcgacctgcgggccttgaacctcgggcacgatgggtgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgt