Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAACATCAAGGGTCTGCTGGACCTGACCTGCCAGACTGTGGCTCAGATGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagcaccgctttaaggttggggctgtagcggctagagatggggctgtgcgaggcgaggggggacggaagtgggtgtcgacacgcaggcgtcggga...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05410
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14238265|gb|BG857081.1|BG857081
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|9028346|gb|BE238386.1|BE238386
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGA-CCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|16072985|gb|BI874981.1|BI874981
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTT-ACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|22048905|gb|BQ808451.1|BQ808451
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|10772658|gb|AV623481.1|AV623481
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGA
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGA
EST: gi|16073343|gb|BI875339.1|BI875339
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|23360499|gb|BU648319.1|BU648319
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|22059318|gb|BQ813369.1|BQ813369
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|14233097|gb|BG851913.1|BG851913
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|9458554|gb|BE452298.1|BE452298
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|10126354|gb|BE725058.1|BE725058
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|10776452|gb|AV633132.1|AV633132
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAAACAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|8828365|gb|BE212095.1|BE212095
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|8514400|gb|BE122295.1|BE122295
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|22050919|gb|BQ809410.1|BQ809410
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGAGGTCCGCCGCGAGAACCAGTGG
EST: gi|8287622|gb|BE025181.1|BE025181
EST:     TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAG                         AACGACTTCACGCCCGAGGAGGAGGAGGA
genomic: TGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagca ... cgcaccacagAACGACTTCACGCCCGAGGAGGAGGAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGAACATCAAGGGTCTGCTGGACCTGACCTGCCAGACTGTGGCTCAGATGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGTTTAATATCAAGgtgggcagcaccgctttaaggttggggctgtagcggctagagatggggctgtgcgaggcgaggggggacggaagtgggtgtcgacacgcaggcgtcggga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacgca