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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTACTTCAACAACACGGATGGGCTCATCTTCGTGGTGGACAGCCAGGACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgggcgcagcgagctgcacacgttttgtcggggcgggcggcattacaaatacgaagccccgagtgcgctgggctgcactgcaccgggaagggg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05355
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369495|gb|BI528921.1|BI528921
EST:     ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAG                         GACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
genomic: ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgg ... cctggcgcagGACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
EST: gi|14232246|gb|BG851062.1|BG851062
EST:     ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAG                         GACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
genomic: ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgg ... cctggcgcagGACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
EST: gi|161818070|gb|FC102257.1|FC102257
EST:     ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAG                         GACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
genomic: ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgg ... cctggcgcagGACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
EST: gi|23362323|gb|BU650143.1|BU650143
EST:     ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAG                         GACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
genomic: ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgg ... cctggcgcagGACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
EST: gi|6547469|gb|AV393253.1|AV393253
EST:     ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAG                         GACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
genomic: ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgg ... cctggcgcagGACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
EST: gi|15694043|gb|BI718348.1|BI718348
EST:     ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAG                         GACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
genomic: ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgg ... cctggcgcagGACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
EST: gi|15370728|gb|BI530154.1|BI530154
EST:     ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAG                         GACCCGCTGATGCTGCACAGCGCCATTCTGGTGTTCGCCAA
genomic: ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgg ... cctggcgcagGACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAA
EST: gi|15372769|gb|BI532195.1|BI532195
EST:     ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAG                         GACCCGCTGATGCTGCACAGCGCCATCCTTGGTGTTCGCCAACAAGCAGGA
genomic: ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgg ... cctggcgcagGACCCGCTGATGCTGCACAGCGCCATCCT-GGTGTTCGCCAACAAGCAGGA
EST: gi|16072772|gb|BI874768.1|BI874768
EST:     ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAG                         GACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC
genomic: ACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgg ... cctggcgcagGACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATTACTTCAACAACACGGATGGGCTCATCTTCGTGGTGGACAGCCAGGACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCTGCAGgtgcgtgcgggcgcagcgagctgcacacgttttgtcggggcgggcggcattacaaatacgaagccccgagtgcgctgggctgcactgcaccgggaagggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacaaa