1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAGgtgaatgctgaaagcatgtttgggggaggggcgctgtatgggacgggaagtgcagtgaggggtcgtgtgcttgtcatttgcctggttgctgtgcgtggag...
species | Chlamydomonas reinhardtii |
transcript | EDP04786 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAG GTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACCEST: gi|23364905|gb|BU652725.1|BU652725
genomic: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAGgtgaatgctg ... ctgctctcagGTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACC
EST: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAG GTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACCEST: gi|16071428|gb|BI873424.1|BI873424
genomic: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAGgtgaatgctg ... ctgctctcagGTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACC
EST: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAG GTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACCEST: gi|22072895|gb|BQ822249.1|BQ822249
genomic: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAGgtgaatgctg ... ctgctctcagGTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACC
EST: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAG GTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACCEST: gi|161793914|gb|FC079827.1|FC079827
genomic: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAGgtgaatgctg ... ctgctctcagGTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACC
EST: TTGTCAAGGCCAGCAGTGGGCCACGCTACGTGGTGGGCGTCCGGACAAAG GTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGACATGACCEST: gi|15372492|gb|BI531918.1|BI531918
genomic: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAGgtgaatgctg ... ctgctctcagGTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACC
EST: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAG GTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACCEST: gi|161794482|gb|FC080785.1|FC080785
genomic: TTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAGgtgaatgctg ... ctgctctcagGTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACC
EST: GGTGGGCGTCCGGACAAAG GTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGACATGACC
genomic: GGTGGGCGTCCGGACAAAGgtgaatgctg ... ctgctctcagGTGGACAAGACCAAGCTGACTGCGGGCACGCGCGTGTCTCTGGATATGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAAGgtgaatgctgaaagcatgtttgggggaggggcgctgtatgggacgggaagtgcagtgaggggtcgtgtgcttgtcatttgcctggttgctgtgcgtggag
- - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcgt