1 5' 3' | 2 5' 3' |
CGACAACGTCACTGACCTGGGTGGCCTTGAGCTGCTGGAGCCCGTGTACGCCTCACTGACGGCCGTGCGCCGCTCCGCCGCATCCGTCACACAGGCGCAGgtgcggggcggcgctctgcgggtctggacaggggggagcgtttccgcgcgttccggccccgccaatggcagccggacgcagtgcaaggctgcaccaatct...
species | Chlamydomonas reinhardtii |
transcript | EDP02698 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTCACTGACGGCCGTGCGCCGCTCCGCCGCATCCGTCACACAGGCGCAG GTGGACCGCGCCGTGGATTACCTGTATGAGACCGTTCTGGAGCGCCGCTTTEST: gi|15704608|gb|BI728913.1|BI728913
genomic: CCTCACTGACGGCCGTGCGCCGCTCCGCCGCATCCGTCACACAGGCGCAGgtgcggggcg ... gcctcaccagGTGGACCGCGCCGTGGATTACCTGTATGAGACCGTTCTGGAGCGCCGCTTT
EST: CCTCACTGACGGCCGTGCGCCGCTCCGCCGCATCCGTCACACAGGCGCAG GTGGACCGCGCCGTGGATTACCTGTATGAGACCGTTCTGGAGCGCCGCTTTEST: gi|22073414|gb|BQ822752.1|BQ822752
genomic: CCTCACTGACGGCCGTGCGCCGCTCCGCCGCATCCGTCACACAGGCGCAGgtgcggggcg ... gcctcaccagGTGGACCGCGCCGTGGATTACCTGTATGAGACCGTTCTGGAGCGCCGCTTT
EST: CCTCACTGACGGCCGTGCGCCGCTCCGCCGCATACGTCACACAGGCGCAG GTGGACCGCGCCGTGG
genomic: CCTCACTGACGGCCGTGCGCCGCTCCGCCGCATCCGTCACACAGGCGCAGgtgcggggcg ... gcctcaccagGTGGACCGCGCCGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACAACGTCACTGACCTGGGTGGCCTTGAGCTGCTGGAGCCCGTGTACGCCTCACTGACGGCCGTGCGCCGCTCCGCCGCATCCGTCACACAGGCGCAGgtgcggggcggcgctctgcgggtctggacaggggggagcgtttccgcgcgttccggccccgccaatggcagccggacgcagtgcaaggctgcaccaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccaat