1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCACGGAGCGTACCTGCACGCGTCTCCTCACGGgtaaggcgctgtcccaaacgtgctgaccccggtcacgtgggctcaccgacggctctttcgtgggactgtaaagctacataccagtgcctcccttgcgcac...
species | Chlamydomonas reinhardtii |
transcript | EDP02679 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTCACGGAGCGTACCTGCACGCGTCTCCTCACGG GCCAGCGCTGTCAGCGTGCGCTGCACCATCCAGGAGGCCCGCCCGGCGTCCEST: gi|10789060|gb|AV626780.1|AV626780
genomic: GTTCACGGAGCGTACCTGCACGCGTCTCCTCACGGgtaaggcgct ... aaccacgcagGCCAGCGCTGTCAGCGTGCGCTGCACCATCCAGGAGGCCCGCCCGGCGTCC
EST: GTTCACGGAGCGTACCTGCACGCGTCTCCTCACGG GCCAGCGCTGTCAGCGTGCGCTGCACCATCCAGGAGGCCCGCCCGGCGTCCEST: gi|49468948|gb|BP096809.1|BP096809
genomic: GTTCACGGAGCGTACCTGCACGCGTCTCCTCACGGgtaaggcgct ... aaccacgcagGCCAGCGCTGTCAGCGTGCGCTGCACCATCCAGGAGGCCCGCCCGGCGTCC
EST: GTTCACGGAGCGTACCTGCACGCGTCTCCTCACGG GCCAGCGCTGTCAGCGTGCGCTGCACCATCCAGGAGGCCCGCCCGGCGTCC
genomic: GTTCACGGAGCGTACCTGCACGCGTCTCCTCACGGgtaaggcgct ... aaccacgcagGCCAGCGCTGTCAGCGTGCGCTGCACCATCCAGGAGGCCCGCCCGGCGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCACGGAGCGTACCTGCACGCGTCTCCTCACGGgtaaggcgctgtcccaaacgtgctgaccccggtcacgtgggctcaccgacggctctttcgtgggactgtaaagctacataccagtgcctcccttgcgcac
- - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgcct