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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP02072
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtg--cgggacctaga--catgcgcgcgaatgctgcaaccgggc-ctgcttttcttcgcgcgctg--gccgctcaccatcgcaacc-tgtt-gcag----
                 | |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| || || || ||       ||||||  ||   || |    ||  | | |||||||  |  | |    |  ||   |   |||  ||   || |||       ||  ||   || | ||    
GGGAGCGGCGGCGATGGATGAGGAGTACGACGTGATCGTGCTGGGGACGGGGCTCAAGGAGTGCATCATCAGCGGCCTCCTCTCCGTCGATGGCCTCAAGgtgaccgaatcccatctccaatctctcgaatgcaccctctgattgcaactcgacaatgcgttctactgctgctggtgcgtgcgtccgcattagtagatct

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcg-------ggacctagacatgcg----cgcgaatgctgcaaccgggcctgcttttcttcg----cgcgctggccgctcaccatcgcaacctgttgcag
                 | |||||||| ||||||||||||||||| ||||| || |||||||||||| |||| ||||| || || || |||      ||||| |           || |  ||| ||    | |   ||||   | |||  || |   || |||      ||  |  ||| | |||   || |   |     
GCCGCTCGCCGCCATGGATGAGGAGTACGACGTGATCGTGCTGGGGACGGGCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctctcctacccaatccatccgccgcctcccgtgctcggatcggtgctccccatcgtcgtcgatccgtagatcgccccccacttcatctcatctg--

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag-------------
                 | |||||||| |||||||||||||| || ||||| || |||||||||||| |||| ||||| || || || |||      ||||| || | |   | |   ||      |    |   |   |   || |   || | |||| |||||   | |       | |  |  |             
ACGAGCAGGAGCCATGGATGAGGAGTACGACGTGATCGTGCTCGGGACGGGCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggctagggctctcgtctctctctctctctctctctctctctctctcacccgctcgccgccggctactagcttccgcagatgctcgccgtcgccg

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: LOC_Os07g16970.2 (Oryza sativa), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag----------------
                 ||| |||||| |||||||||||||| || ||||| || |||||||||||| |||| ||||| || || || ||       ||||||     | |   |||         |    |   |   |   || |   || | | ||   | ||| ||  | |     | |  ||                
CCGCCCGCCCGCCATGGACGTGGAGTACGACGTGATCGTGCTCGGGACGGGGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGATCGCCTCAAGgtggtctccttctccatctctctctctctctctctctctctctctctctctctctctct---ctctctcccgcccggatcgatctagctagggcatcgcgtca

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GRMZM2G435373_T01 (Zea mays), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcgcgcgaatg--ctgcaaccgg-gcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag----------
                 | |||||||| |||||||||||||| |||||||| || |||||||||||| ||||||| || || || || |||      |||||| |         |   ||| |   |   ||||| |||  ||  |    ||   |   || |  | |  |   | |   |  ||   ||          
CAGCCAGCCAGCCATGGATGAGGAGTACGACGTGATCGTGCTTGGCACGGGGCTCAAGGAGTGCATCCTCAGTGGTCTCCTTTCCGTCGACGGCCTCAAGgtgagcccgtcgatcgcccgctctcttctcctgcagccgccgctcgtagatccgtggctgccgtgctcggattttgggtccgcgtaatagtccggtgctt

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 1
---AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcg-cgcgaatgctgcaaccgggcctg---cttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag---------
    |||||||||| ||||||||||| ||||||||||| || |||||||||||| |||| || || || || || |||      |||||| |   |    ||  ||  | ||    | |||| ||| |||    |   ||  || |  |   | ||    |  | |  |  ||  | |         
ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccacccgcctcccggtaacggcaatcggacctcaccccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GRMZM2G084440_T01 (Zea mays), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcg---ctggccgctcaccatcgcaacctgttgcag-------------
                 | |||||||| |||||||||||| |||| ||||| || ||||||||||||||||| ||||| || || || ||       |||||  ||      |   |||| |||   | ||||  |  |     | |||||||  ||   |   |||   |   | ||    | |  ||              
AAGAGAGAGAGAGATGGATGAGGAGTACGACGTGATCGTGTTGGGGACGGGGCTCAAGGAGTGCATCATCAGCGGCCTCCTCTCCGTCGATGGCCTCAAGgtctggccgggtgcagtgcgtgcgtgcg-tgcatgcatgatgattcttcttcgttcggatccaaccgtcaatgtttgcgtaatataacaatgtgattgcacag

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GRMZM2G047431_T01 (Zea mays), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag--------------
                 | | |||||| |||||||||||||||||||| || || |||||||||||| |||| ||||| || || ||||||      ||||| ||  ||      | |  |||       |   ||   |   || | | ||   ||  |||| ||    ||   | |  |     |              
CCGCGCGCGCGCCATGGATGTGGAGTACGACGTGATCGTGCTGGGCACCGGGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCTGTGGACCGCCTCAAGgtacgttacgctactacg-acgcctccatcgatcccctcctctctctccctccgtcgtcggccacttctaataagatcgcgccctggtggttatccatttt

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GRMZM2G117507_T01 (Zea mays), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcggg-acctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgc-gcgctggccgctcaccatcgcaacctgttgcag-----------
                 | |||||||| ||||||||||| || |||||||| || |||||||||||| |||| || || || || || |||      |||||  |    ||    |     | | |  || ||| |  |  |      |    || | ||| |    |      |||       | | |           
CCGGCAGCCAGCCATGGATGAGGAGTACGACGTGATCGTACTAGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgcccgctcgcttcccctacagccgcagctagtacgatccatagctgccgtgctcggaatttgggtccgcgtataagtccggtgcttcaaggt

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GLYMA05G30140.3 (Glycine max), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatg-----cgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag
                 | |||||||| || ||||||||| ||||||||||||| |||||||||||  |||| || || || || || ||       ||||| |     | |  |||      ||      |  |     |   |   |   || ||||  |||    |||     | |      | | |||
AGATCGATCGAACATGGATGAGGAGTACGATGTGATCGTGTTGGGCACGGGTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtactatttccattcatcactttcgtttttcttttcttttcaatcgatccaatcctcgcatgctaattgctatttcttgt---tcgattcag

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GLYMA08G13300.3 (Glycine max), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcgcgcgaatgctgcaaccgggcctgctt-ttcttcgcgcgctggccgctcaccatcgca-acctgttgcag
                 | |||||||| || ||||||||| ||||||||||||| |||||||||||  |||| || || || || || ||       ||||| ||    |   || | |       |        |    ||     | |    | | |  ||   |  | ||  |      | | |||
AGATCGATCGAACATGGATGAGGAGTACGATGTGATCGTGTTGGGCACGGGTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactcatcactttcctatttctttcattttcttttctatagatccaattctctcatgctaattcctatttcttgttcgattcag

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GLYMA07G24480.1 (Glycine max), 5'ss of exon 1
---AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcg-cgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag
    | |||| ||  || ||||||||| ||||||||||||| |||||||||||  |||| || || || || || ||       ||||| |    |     | |    |   |||  |     |       |   |  ||||  | |     ||     | |      | | |||
ATGGATGAGGGGTGCGATGTGATCGTGTTGGGCACGGGTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCTGTCGATGGCCTCAAGgtactcatcagtttcctatttctttaattttcttttcaatagatccaattctcgcatgttaattcctatttgttgt---tcgattcag

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtg--cgggacctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag-----------
                 | || ||||| || ||||| ||||||||||| || ||||||||||||||| ||||||| || || || |||||       ||||||   |||| |       | |   ||    ||  ||  || | |  |  | | ||   | |  | ||     | ||      |||  |           
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgggatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctctctgggtgtagcgtggatttgtggtcggcgaggga

upper sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: EFJ11673 (Selaginella moellendorffii), 5'ss of exon 1
----------------AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggac-ctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag
                 | |||||||| ||||| || |||||||| |||||||| |||||||||||| |||| || ||||||||||||||       |||||| |     || ||   | |   |||  |  |   |  ||                                               
GTTTTGGTGCGCCATGGATGAGGAGTACGACGTCATTGTGCTGGGGACGGGTCTCAAGGAGTGCATCCTCAGCGGGCTGCTGTCGGTGGATCGTCTCAAGgtgggtttttctcgatcggagttggaagacatctctctcgcag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14228932|gb|BG847764.1|BG847764
EST:     TTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: -TCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|15692808|gb|BI717113.1|BI717113
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|15695185|gb|BI719490.1|BI719490
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|10792553|gb|AV629919.1|AV629919
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|10778846|gb|AV635526.1|AV635526
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|23367697|gb|BU655515.1|BU655515
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|16072685|gb|BI874681.1|BI874681
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|23363461|gb|BU651281.1|BU651281
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|15695448|gb|BI719753.1|BI719753
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|8933063|gb|BE227824.1|BE227824
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|16437590|gb|BM002810.1|BM002810
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|16431544|gb|BI996770.1|BI996770
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|22050064|gb|BQ809049.1|BQ809049
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|23365706|gb|BU653526.1|BU653526
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
EST: gi|15697745|gb|BI722050.1|BI722050
EST:     GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAG                         GTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC
genomic: GTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacc ... cctgttgcagGTCCTGCATGTGGACCGCAACAACTACTACGGTGGCGAGTCCGCGTCGCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcgcgcgaatgctgcaaccgggcctgcttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag

- - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG