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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGCCGCGCAGCGCCATCCTGGACCTCATCAAGCAGCGCGTGGTGGCGCCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAGgtgcgtagaccttggtcttggcgcggcatgaatgagctcggcatgctgactgggcacgtgttggtcaccgggcctgccgtcgcgcccgttgcatacctcgcacacatatacatccacaccccgccaacactcgcgctgccccccccccctccccacccgcctggaccctgtgtgtgtgtcgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01859
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23365392|gb|BU653212.1|BU653212
EST:     CCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAG                         GTTCCACATCAGCGGCGCGGCGGCCCTGTTTGACGAGCAGGAGCAGCCCAT
genomic: CCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAGgtgcgtagac ... tgtcgcgcagGTTCCACATCAGCGGCGCGGCGGCCCTGTTTGACGAGCAGGAGCAGCCCAT
EST: gi|9210550|gb|BE337465.1|BE337465
EST:     CCGGAGTCTCATGCCCGCCCGGCGGGCTGGTATACCAAGCTGCTTTATAG                         GTTCCACATCAACGGCGCGGCGGCCCTGTTTGACGAGCAGGAGCAGCCCAT
genomic: CCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAGgtgcgtagac ... tgtcgcgcagGTTCCACATCAGCGGCGCGGCGGCCCTGTTTGACGAGCAGGAGCAGCCCAT
EST: gi|9441218|gb|BE441822.1|BE441822
EST:     CCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAG                         GTTCCACATCAACGGCGCGGCGGCCCTGTTTGA
genomic: CCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAGgtgcgtagac ... tgtcgcgcagGTTCCACATCAGCGGCGCGGCGGCCCTGTTTGA
EST: gi|9210549|gb|BE337464.1|BE337464
EST:     CCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAG                         GTTCCACATCAGCGGCGCGGCGGCCCTGTTTGACGAGCAGGAGCAGCCCAT
genomic: CCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAGgtgcgtagac ... tgtcgcgcagGTTCCACATCAGCGGCGCGGCGGCCCTGTTTGACGAGCAGGAGCAGCCCAT
EST: gi|14240246|gb|BG859062.1|BG859062
EST:     CCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAG                         GTTCCACATCAGCGGCGCGGCGGCCCTGTTTGACGAGCAGGAGCAGCCCAT
genomic: CCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAGgtgcgtagac ... tgtcgcgcagGTTCCACATCAGCGGCGCGGCGGCCCTGTTTGACGAGCAGGAGCAGCCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCGCCGCGCAGCGCCATCCTGGACCTCATCAAGCAGCGCGTGGTGGCGCCGGAGTCTCATGCCCGCCCGGTGGGCTGGTATACCAAGCTGCTTTATAGgtgcgtagaccttggtcttggcgcggcatgaatgagctcggcatgctgactgggcacgtgttggtcaccgggcctgccgtcgcgcccgttgcatacctcgcacacatatacatccacaccccgccaacactcgcgctgccccccccccctccccacccgcctggaccctgtgtgtgtgtcgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT