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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgttggccttggaaacctggttcgtgtgattgcctcgggttctcgatgccaggtctccggaaagaacgcgaaaggtcctgttggtcggcacgt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01724
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7593535|gb|AW707786.1|AW707786
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|7616319|gb|AW721759.1|AW721759
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|49470868|gb|BP098729.1|BP098729
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|7427096|gb|AW661269.1|AW661269
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|7615707|gb|AW721147.1|AW721147
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|49469711|gb|BP097572.1|BP097572
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|7426881|gb|AW661054.1|AW661054
EST:     C-AGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|7413233|gb|AW651987.1|AW651987
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTTAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|7427390|gb|AW661556.1|AW661556
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|7616236|gb|AW721676.1|AW721676
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
EST: gi|7426808|gb|AW660981.1|AW660981
EST:     CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGG                         GCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG
genomic: CAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgt ... cctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGCTGCCCCCAAGGGCGCTGGTATCGAGTTCTATGGCCCCAACCGCGCCAAGTGGCTGGgtgagtgcgttggccttggaaacctggttcgtgtgattgcctcgggttctcgatgccaggtctccggaaagaacgcgaaaggtcctgttggtcggcacgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgttg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt