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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataatgggcaacgctggggcttgctttggcacttgcgacgaggggctcatgtccctgttgaattgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01675
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8576473|gb|BE129014.1|BE129014
EST:     GNCACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|10127075|gb|BE725779.1|BE725779
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|15367917|gb|BI527343.1|BI527343
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|161819692|gb|FC110730.1|FC110730
EST:     GCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|8513770|gb|BE121665.1|BE121665
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|14235024|gb|BG853840.1|BG853840
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|10778258|gb|AV634938.1|AV634938
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|23363493|gb|BU651313.1|BU651313
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|15705113|gb|BI729402.1|BI729402
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|9210580|gb|BE337495.1|BE337495
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|10770885|gb|AV621708.1|AV621708
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|8400964|gb|BE056598.1|BE056598
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|10782350|gb|AV639030.1|AV639030
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|10790358|gb|AV627724.1|AV627724
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|10125696|gb|BE724400.1|BE724400
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|15373603|gb|BI533029.1|BI533029
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|161812247|gb|FC097815.1|FC097815
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|161810681|gb|FC096834.1|FC096834
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
EST: gi|15910544|gb|BI816399.1|BI816399
EST:     GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAA                         GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC
genomic: GACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataa ... tgaattgcagGGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCTTACCCTGCCGCTGGACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAgtgagtataatgggcaacgctggggcttgctttggcacttgcgacgaggggctcatgtccctgttgaattgcag

- - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - CTGCAG