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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTGGCGGCGAGGTGAACCGCATCCTGGCGGCACACCAGAAGAAGAACAAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcagaggggcaaggggacaggggaagggagggacacggggccgggcagcgcagcaaaggggcgaccgaagggcgtagggtgtagcggcaccagg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01639
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49466677|gb|BP094590.1|BP094590
EST:     AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|49467899|gb|BP095760.1|BP095760
EST:     AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|10786332|gb|AV643004.1|AV643004
EST:     AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|10784603|gb|AV641275.1|AV641275
EST:     AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|10784314|gb|AV640986.1|AV640986
EST:     CCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: CCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|10782916|gb|AV639588.1|AV639588
EST:     CCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: CCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|10790055|gb|AV627421.1|AV627421
EST:     AAGCTGCCCATCCAG-ACACGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|10792349|gb|AV629715.1|AV629715
EST:     AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|10788843|gb|AV626563.1|AV626563
EST:     AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|10791128|gb|AV628494.1|AV628494
EST:     AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
EST: gi|10790801|gb|AV628167.1|AV628167
EST:     AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAG                         CTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG
genomic: AAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcag ... gcgtgcgcagCTGCATGATCGGCGGCATCGTGTCCAACAACAGCAGCGGCATGTGCTGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATTGGCGGCGAGGTGAACCGCATCCTGGCGGCACACCAGAAGAAGAACAAGCTGCCCATCCAGTACAAGATCGGACCCGACCCCTCCTCCATCGACAGgtgggggcagaggggcaaggggacaggggaagggagggacacggggccgggcagcgcagcaaaggggcgaccgaagggcgtagggtgtagcggcaccagg

- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggtgt