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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATCAACGCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAGgtgggcgacacagagagagggagtgggaaatgagcgtatgcatgcgtgcgcctgcgggttgttgggcgagaggggtgccgcctcccacgcctaccccttc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP00016
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15700888|gb|BI725193.1|BI725193
EST:     GCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAG                         GAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
genomic: GCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAGgtgggcgaca ... ccaaacccagGAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
EST: gi|23365110|gb|BU652930.1|BU652930
EST:     GTGACTGGCAGCCTGGTGTCACTGTCGGAGCAG                         GAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
genomic: GTGACTGGCAGCCTGGTGTCACTGTCGGAGCAGgtgggcgaca ... ccaaacccagGAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
EST: gi|49469430|gb|BP097291.1|BP097291
EST:     GGCATCAACGCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAG                         GAGCTGGTGGACTG
genomic: GGCATCAACGCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAGgtgggcgaca ... ccaaacccagGAGCTGGTGGACTG
EST: gi|15700890|gb|BI725195.1|BI725195
EST:     GCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAG                         GAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
genomic: GCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAGgtgggcgaca ... ccaaacccagGAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
EST: gi|15700889|gb|BI725194.1|BI725194
EST:     GCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAG                         GAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
genomic: GCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAGgtgggcgaca ... ccaaacccagGAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
EST: gi|10769832|gb|AV620657.1|AV620657
EST:     GGCATCAACGCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAG                         GAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
genomic: GGCATCAACGCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAGgtgggcgaca ... ccaaacccagGAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
EST: gi|10790295|gb|AV627661.1|AV627661
EST:     GGCATCAACGCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAG                         GAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG
genomic: GGCATCAACGCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAGgtgggcgaca ... ccaaacccagGAGCTGGTGGACTGCGACACGGAGCAGGATAAGGGCTGCAGCGGCGGCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCATCAACGCCATCGTGACTGGCAGCCTGGTGTCACTGTCGGAGCAGgtgggcgacacagagagagggagtgggaaatgagcgtatgcatgcgtgcgcctgcgggttgttgggcgagaggggtgccgcctcccacgcctaccccttc

- - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccacgc