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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGGACGCTACACCGTGCTGAAGAAGCTCGGCTGGGGCCACTTTTCGACCGTCTGGCTCGTGCACGATGCCGAGACGGGCGAGTACCGCGCGCTAAAGgtgcgcgatattggctgcagggggactgcgggagagctcctagaccttaatttcgtgtcccccctgcccgcccag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99637
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO99637 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
---------------CAAC--GGACGC-TACACCGTGCTGAAGAAGCTCGGCTGGGGCCACTTTTCGACCGTCTGGCTCGTGCACGATGCCGA--GACGGGCGAGTACCGCGCGCTAAAGgtgcgcgatattggctgcagggggact-gcgggagagctcctagaccttaatttcgtgtcccccctgcccgcccag------
               |||   || ||| |||  ||||| |   |||||||| ||||||||||| || |||||||||||||     ||  |||        | | || |    | ||   |   | |        |   |      || | || |  |    |   || |  ||||   |||    | |  |   |       
CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttcccccct--tttcccttcctagattcgtgatgatttgtgg

upper sequence: EDO99637 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GRMZM2G162086_T02 (Zea mays), 5'ss of exon 1
------------------CAACGGACGCTACACCGTGCTGAAGAAGCTCGGCTGGGGCCACTTTTCGACCGTCTGGCTCGTGCACGATGCCGAGACGGGCGAGTACCGCGCGCTAAAGgtgcgcgatattggctgcagggggactgcgggagagctcctagaccttaatttcgtgtcccccctgc-ccgcccag--------------
                  |  ||| ||||||  ||  | |  |||||||||||||||| |||| || |||||||||||||    ||| | | || |   |  |||  ||||||    | |  |   | ||  | ||| | | |   ||| |   ||||  |           | |  ||| | || ||||   |              
CCCCGGGGACCAGTTCGCCGCCGGCCGCTACGTCGCCCAGCGGAAGCTCGGCTGGGGCAACTTCTCCACCGTCTGGCTCGCCTTCGACGTCCAGTCA--CAGgtag-gcgcgccctcgctctggcctctt--ccgcatgag-atcacggcat--ctccccgcttcccgcgcggcgatccctccgctccgcttcgtaatgcgattgccc