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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccgctgcgagggcttgtcgcggcggcgtggggtgccggggcgacctgagctgacggagtttcttcgcgttctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98981
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808568|gb|FC094884.1|FC094884
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|8514103|gb|BE121998.1|BE121998
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|6546929|gb|AV392713.1|AV392713
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|14242417|gb|BG861233.1|BG861233
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|14237056|gb|BG855872.1|BG855872
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|161797931|gb|FC087420.1|FC087420
EST:     CGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|10794296|gb|AV631662.1|AV631662
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|14238089|gb|BG856905.1|BG856905
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCNCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGC-CGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTG
EST: gi|22053864|gb|BQ811001.1|BQ811001
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|10780917|gb|AV637597.1|AV637597
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|14240342|gb|BG859158.1|BG859158
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|15369196|gb|BI528622.1|BI528622
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GC-CTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|6542859|gb|AV388643.1|AV388643
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|10787302|gb|AV643974.1|AV643974
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|22076196|gb|BQ824972.1|BQ824972
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|14242051|gb|BG860867.1|BG860867
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|10791112|gb|AV628478.1|AV628478
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|16431135|gb|BI996361.1|BI996361
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|22071303|gb|BQ820641.1|BQ820641
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|10773522|gb|AV624345.1|AV624345
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACACCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|161795972|gb|FC085317.1|FC085317
EST:     ACTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGACGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|22072954|gb|BQ822308.1|BQ822308
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATTTGCAACC                         GCGCTCTGTTGGCCGTGGCTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|6544166|gb|AV389950.1|AV389950
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|10784987|gb|AV641659.1|AV641659
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|7687062|gb|AW757710.1|AW757710
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|10779996|gb|AV636676.1|AV636676
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|14240161|gb|BG858977.1|BG858977
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTNGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCT-GCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTG
EST: gi|15367764|gb|BI527190.1|BI527190
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|6545280|gb|AV391064.1|AV391064
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|6545353|gb|AV391137.1|AV391137
EST:     CCTGAGGTGGTCACCAAGTACAATGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAACGATGGCGCTAATGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|22071304|gb|BQ820642.1|BQ820642
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGCCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTGG
EST: gi|14240115|gb|BG858931.1|BG858931
EST:     CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC                         GCGCTCTGCTGGCNCGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTG
genomic: CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACCgtaagttccg ... cgttctgcagGCGCTCTGCTGGC-CGTGGTTGAGGCTGCCAAGGATGGCGCTAAGGTGGTG