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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgcttttcgtttggctcgtgcatgcttgcacgcgttatatgcatgtatgaagccatgttgagcatacttgcttctttggactctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98923
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO98923 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GRMZM2G047055_T04 (Zea mays), 5'ss of exon 3
GCTGGCTTTGCTGG-TGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG-----GGCCGGCCCCGCCA-CACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgcttttcgtttggctcgtgcatgcttgcacgcgttatatgcatgtatgaagccatgttgagcatacttgcttctttggactctgcag-----------
     | | | |||  |     ||| | | || |||| |       || | |     ||  | |  || |  |  ||  | |  |  |  || |||      |   | |  |     | |   || ||     |   |||   |  |    |||| |  |   |  |   | || || | || |   |  ||| |              
-----CATCGTTGGGCGCCCGCGCCACAC-CGGTGTGATGGTGGGGATGGGGCAGAAGGATGCCTACGTCGGCGACGAGGCGCAGTCCAAGAGGGGTATCCTGACCctcaagtaccccatcgagcacggaatcgtcagcaactgggacg-acatggagaagatctggc--atcacaccttctacaacgagctccgtgtggctcccgagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22053164|gb|BQ810620.1|BQ810620
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|10789628|gb|AV626993.1|AV626993
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|10777850|gb|AV634530.1|AV634530
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|22053091|gb|BQ810588.1|BQ810588
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|22069702|gb|BQ819234.1|BQ819234
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|10127691|gb|BE726395.1|BE726395
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|15370241|gb|BI529667.1|BI529667
EST:     TGGGCCAGGCCACCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGACCAAGCGCGGTATTCTGACTCTG
genomic: TGGGCC-GG-C-CCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|161797057|gb|FC085662.1|FC085662
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|22071637|gb|BQ820975.1|BQ820975
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|22070013|gb|BQ819473.1|BQ819473
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|9458838|gb|BE452551.1|BE452551
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|49461896|gb|BP089809.1|BP089809
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|14240923|gb|BG859739.1|BG859739
EST:     CGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCT
genomic: CGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGG-CCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCT
EST: gi|8576564|gb|BE129201.1|BE129201
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCAGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGAG-GCAGTCCAAGCGCGGTATTCTGACTCT
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAG-GCGCAGTCCAAGCGCGGTATTCTGACTCT
EST: gi|49464429|gb|BP092342.1|BP092342
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|49469137|gb|BP096998.1|BP096998
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|10191366|gb|BE761442.1|BE761442
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
EST: gi|23362091|gb|BU649911.1|BU649911
EST:     TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG                         GACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG
genomic: TCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgc ... gactctgcagGACTCGTACGTTGGCGACGAGGCGCAGTCCAAGCGCGGTATTCTGACTCTG