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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAACCCGACCTGGGCCTCCGTGCCGTATGGAGTCTTCATCTGCCTGAACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccactcgcgggctggctcgcggccgcgccgtgaccggctcaaggagcgtaactgagacgaagattgcgtatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98081
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15704435|gb|BI728740.1|BI728740
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|23366005|gb|BU653825.1|BU653825
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|15369548|gb|BI528974.1|BI528974
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|16072701|gb|BI874697.1|BI874697
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|14229761|gb|BG848577.1|BG848577
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|8287287|gb|BE024846.1|BE024846
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGGGCG                         GGCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|14229760|gb|BG848576.1|BG848576
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|16436996|gb|BM002216.1|BM002216
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|23363043|gb|BU650863.1|BU650863
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|14237609|gb|BG856425.1|BG856425
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|22068393|gb|BQ818332.1|BQ818332
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|23362874|gb|BU650694.1|BU650694
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|22073645|gb|BQ822983.1|BQ822983
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
EST: gi|22073669|gb|BQ823007.1|BQ823007
EST:     AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCG                         GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG
genomic: AACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccac ... gcgtatgcagGTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGAACCCGACCTGGGCCTCCGTGCCGTATGGAGTCTTCATCTGCCTGAACTGCGCGGGCATCCATCGGTCTTTGGGAGTGCACATCAGCTTCGTGCGgtaagtccactcgcgggctggctcgcggccgcgccgtgaccggctcaaggagcgtaactgagacgaagattgcgtatgcag

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