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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCGCGCGCTGGACGATGGCTACGATGTTCGTTGCCTGGTTCGCCCCCGTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttacatttcagaatctggcaaagggcgtagatggggcgacatgtcagggccacacgccgatcgacgcgagaactggggtacttttgtgccagctgcgcttgtgtgctgctttggcgtaaaaccatcgatgccattatgccttcttgcctgcctcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98046
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15367687|gb|BI527113.1|BI527113
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|14237765|gb|BG856581.1|BG856581
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|14240632|gb|BG859448.1|BG859448
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|22074089|gb|BQ823292.1|BQ823292
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|22059343|gb|BQ813385.1|BQ813385
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|15372908|gb|BI532334.1|BI532334
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|7593489|gb|AW707740.1|AW707740
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|22065979|gb|BQ816678.1|BQ816678
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|22065986|gb|BQ816683.1|BQ816683
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|14238251|gb|BG857067.1|BG857067
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|49464537|gb|BP092450.1|BP092450
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|8513586|gb|BE121481.1|BE121481
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|10782148|gb|AV638828.1|AV638828
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCG
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCG
EST: gi|49464844|gb|BP092757.1|BP092757
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|161817687|gb|FC099976.1|FC099976
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|10782000|gb|AV638680.1|AV638680
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|10127782|gb|BE726486.1|BE726486
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
EST: gi|7615363|gb|AW720809.1|AW720809
EST:     GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAAC                         GGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC
genomic: GTCCCAACCCCGCTGACTTCCTTCGCGATTGGGGCGCCAAGGTCGTGAACgtgagtttac ... cctgcctcagGGTGACCTGACGGACCCCTCGTCCATCCCTGCGTGCTTGGTGGGCGTCAAC