1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGCCAACTGGTGGAGCTGCCCGCCAGCATAGCGGACCTCCCGCGGCTGAAGAAGCTGTTTGCTGGGGCTAACAAgtgagcccgcggacacattggcctcctcgcaacacggccctcagcaacacagtggtggcgcggcagcagcagcgtgcgagcgggggatgggactgcaggc...
species | Chlamydomonas reinhardtii |
transcript | EDO97008 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCATAGCGGACCTCCCGCGGCTGAAGAAGCTGTTTGCTGGGGCTAACAA GCTCCGCGCCATCGACCCGGTGTTCCAGTCCGNCAGCCTGCAGCACGCCGGEST: gi|14237941|gb|BG856757.1|BG856757
genomic: AGCATAGCGGACCTCCCGCGGCTGAAGAAGCTGTTTGCTGGGGCTAACAAgtgagcccgc ... ctgcccccagGCTCCGCGCCATCGACCCGGTGTTCCAGTCCGCCAGCCTGCAGCACGCCGG
EST: AGCATAGCGGACCTCCCGCGGCTGAAGAAGCTGTTTGCTGGGGCTAACAA GCTCCGCGCCATCGACCCGGTGTTCCAGTCCGCCAGCCTGCAGCACGCCGG
genomic: AGCATAGCGGACCTCCCGCGGCTGAAGAAGCTGTTTGCTGGGGCTAACAAgtgagcccgc ... ctgcccccagGCTCCGCGCCATCGACCCGGTGTTCCAGTCCGCCAGCCTGCAGCACGCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCAACTGGTGGAGCTGCCCGCCAGCATAGCGGACCTCCCGCGGCTGAAGAAGCTGTTTGCTGGGGCTAACAAgtgagcccgcggacacattggcctcctcgcaacacggccctcagcaacacagtggtggcgcggcagcagcagcgtgcgagcgggggatgggactgcaggc
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcagca