1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCGCCCTGGACCCCCAGATTGTGATCAGCGGCAGCACTGCCGCTTTCCTGGCCATTGGCCGCTTCGTGTTCCTGGGTTACCAGgtgaggatagtgttcgggcggtgagaggattgcgtgcatctgccttagctctcctgcgtgtatggagcctctgaaattcttttgcaagtgcaagtggggc...
species | Chlamydomonas reinhardtii |
transcript | EDO96591 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCACTGCCGCTTTCCTGGCCATTGGCCGCTTCGAGTTCCTGGGTTACCAG CGCCGTGAGGCCAACTTCGACTCCACCGTGGGCCCCAAGACCACCEST: gi|23366797|gb|BU654616.1|BU654616
genomic: GCACTGCCGCTTTCCTGGCCATTGGCCGCTTCGTGTTCCTGGGTTACCAGgtgaggatag ... gtgttgacagCGCCGTGAGGCCAACTTCGACTCCACCGTGGGCCCCAAGACCACC
EST: GCACTGCCGCTTTCCTGGCCATTGGCCGCTTCGTGTTCCTGGGTTACCAG CGCCGTGAGGCCAACTTCGACTCCACCGTGGGCCCCAAGACCACCEST: gi|7687571|gb|AW758217.1|AW758217
genomic: GCACTGCCGCTTTCCTGGCCATTGGCCGCTTCGTGTTCCTGGGTTACCAGgtgaggatag ... gtgttgacagCGCCGTGAGGCCAACTTCGACTCCACCGTGGGCCCCAAGACCACC
EST: GCACTGCCGCTTTCCTGGCCATTGGCCGCTTCGTGTTCCTGGGTTACCAG CGCCGTGAGGCCAACTTCGACTCCACCGTGGGCCCCAAGACCACC
genomic: GCACTGCCGCTTTCCTGGCCATTGGCCGCTTCGTGTTCCTGGGTTACCAGgtgaggatag ... gtgttgacagCGCCGTGAGGCCAACTTCGACTCCACCGTGGGCCCCAAGACCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCCCTGGACCCCCAGATTGTGATCAGCGGCAGCACTGCCGCTTTCCTGGCCATTGGCCGCTTCGTGTTCCTGGGTTACCAGgtgaggatagtgttcgggcggtgagaggattgcgtgcatctgccttagctctcctgcgtgtatggagcctctgaaattcttttgcaagtgcaagtggggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaagt