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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGCGTCGGGGCAGCAGGCGCTGACGCGCGAGGAGCGCCTGAAGCGGCAGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggctctgggcattgcggctgagttgcagtggcaggtgtgtggtgcaggccgggaccggggcgggacatggaactgaaatccgtgccgccagtcatgactcgcatgcacctcctgcttgcgcgccgccag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96585
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771901|gb|AV622724.1|AV622724
EST:     AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG                         GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
EST: gi|15696824|gb|BI721129.1|BI721129
EST:     AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG                         GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
EST: gi|10784305|gb|AV640977.1|AV640977
EST:     AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG                         GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
EST: gi|15696826|gb|BI721131.1|BI721131
EST:     AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG                         GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
EST: gi|161790197|gb|FC076976.1|FC076976
EST:     AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCG                         GAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC
genomic: AGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCACGTGCGCGgtaaggggct ... gcgccgccagGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTC