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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCCATTGTCGCTAAGGTGCTTATCAAGGCGATCATGCAGGCGCCCGCGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaagtgcagtggaatggcgtttaaagcgtcagggcctgggggagggggtgggtggggtgggttaggggccgcaccgtggggtgccgcccaagacacgcggggaatgctgtggcaccttcatggctgtttccacacctctcctgttccactattgctccatccgttgcacgaaccctgcattgctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96524
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16438449|gb|BM003669.1|BM003669
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|14230111|gb|BG848927.1|BG848927
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|34981088|gb|CF555005.1|CF555005
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|10126273|gb|BE724977.1|BE724977
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|14230597|gb|BG849413.1|BG849413
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|15692442|gb|BI716747.1|BI716747
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|161822949|gb|FC110640.1|FC110640
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|6547366|gb|AV393150.1|AV393150
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|10771200|gb|AV622023.1|AV622023
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|16435576|gb|BM000796.1|BM000796
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|9210565|gb|BE337480.1|BE337480
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|8932823|gb|BE227584.1|BE227584
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|161822162|gb|FC107662.1|FC107662
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|15701505|gb|BI725810.1|BI725810
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|16435492|gb|BM000712.1|BM000712
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
EST: gi|15702977|gb|BI727282.1|BI727282
EST:     CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAG                         TCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC
genomic: CGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaag ... attgctgcagTCTGACGAGTCGGTGTACAAGGTGGTGCAGCTCGCAAACGCGCTGGAGACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTGCCATTGTCGCTAAGGTGCTTATCAAGGCGATCATGCAGGCGCCCGCGCAGGACTACAAATGCTGCATCACGCTGCTTCCAGAGCGCCTGCTGCAGgtgtgcgaagtgcagtggaatggcgtttaaagcgtcagggcctgggggagggggtgggtggggtgggttaggggccgcaccgtggggtgccgcccaagacacgcggggaatgctgtggcaccttcatggctgtttccacacctctcctgttccactattgctccatccgttgcacgaaccctgcattgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG