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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAAgtaagtgcgccggcgccagtaagggcttgcggacaatgtttgatcactggggtttgttcgtttgcctcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96236
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784272|gb|AV640944.1|AV640944
EST:     GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA                         GAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
genomic: GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAAgtaagtgcgc ... tgcctcgcagGAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
EST: gi|10787146|gb|AV643818.1|AV643818
EST:     GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA                         GAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
genomic: GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAAgtaagtgcgc ... tgcctcgcagGAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
EST: gi|10784247|gb|AV640919.1|AV640919
EST:     GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA                         GAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
genomic: GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAAgtaagtgcgc ... tgcctcgcagGAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
EST: gi|49467137|gb|BP095050.1|BP095050
EST:     GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA                         GAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
genomic: GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAAgtaagtgcgc ... tgcctcgcagGAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
EST: gi|49470671|gb|BP098532.1|BP098532
EST:     GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA                         GAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
genomic: GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAAgtaagtgcgc ... tgcctcgcagGAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCT
EST: gi|49468466|gb|BP096327.1|BP096327
EST:     GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA                         GAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCTG
genomic: GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAAgtaagtgcgc ... tgcctcgcagGAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCTG