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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCCGCGCTGGCCACCGAGCAGCAGCACATCCCCTACCGCAACCACAAGCTCACCATGCTCATGTCCGACTCGCTGGGAGGCAACGCCAAGACGCTCATgtgcgtggcttgcttgttgggggcctgggggacgggggcgggttggactgggctgggcggcactgaggggcattgggttgaccagctaggtctgcaggctgctctgccctcggcttctgcgcgaagtgagtctcttgaactgaactttgcgatgtgccgcgtggtcgtgctggcgacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99686
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO99686 (Chlamydomonas reinhardtii), 5'ss of exon 17
lower sequence: EFJ06058 (Selaginella moellendorffii), 5'ss of exon 22
TCTCCGCGCTGGCCACCGAGCAGCAGCACATCCCCTACCGCAACCACAAGCTCACCATGCTCATGTCCGACTCGCTGGGAGGCAACGCCAAGACGCTCATgtgcgtggcttgcttgttgggggcctgggggacgggggcgggttggactgggct--gggcggcac-tgaggggcattgggttgaccagctaggtctgcaggctgctctgccctcggcttctgcgcgaagtgagtctcttgaactgaactttgcgatgtgccgcgtggtcgtgctggcgacag
                                                         ||||||||  |||||||||||| ||||| ||||||||||||||||  ||       |    || ||  |       || || |  |   |    |||  ||   |||   | |   || || || ||   | | | | ||     ||||||  || | |                                                                  
---------------------------------------------------------TGCTCATGAGCGACTCGCTGGGTGGCAATGCCAAGACGCTCATGTTTGTCAACGTGTCCCCGGCGGAGTCCAATCTGGAGGAGACTCACAACTCGCTATGgtaagcaagcgcgatccagtgtgtggatt-gatggatttgttctttgctctttccgcag------------------------------------------------------------------

upper sequence: EDO99686 (Chlamydomonas reinhardtii), 5'ss of exon 17
lower sequence: EFJ30174 (Selaginella moellendorffii), 5'ss of exon 22
TCTCCGCGCTGGCCACCGAGCAGCAGCACATCCCCTACCGCAACCACAAGCTCACCATGCTCATGTCCGACTCGCTGGGAGGCAACGCCAAGACGCTCATgtgcgtggcttgcttgttgggggcctgggggacgggggcgggttggactgggct--gggcggcac-tgaggggcattgggttgaccagctaggtctgcaggctgctctgccctcggcttctgcgcgaagtgagtctcttgaactgaactttgcgatgtgccgcgtggtcgtgctggcgacag
                                                         ||||||||  |||||||||||| ||||||||||||||||||||||  ||       |    || ||  |       || || |  |   |    |||  ||   |||   | |   || || || ||   | | | | ||     ||||||   | | |                                                                  
---------------------------------------------------------TGCTCATGAGCGACTCGCTGGGTGGCAACGCCAAGACGCTCATGTTTGTCAACGTGTCCCCGGCGGAGTCCAATCTGGAGGAGACTCACAACTCGCTATGgtaagcaagcgcgatccagtgtgtggatt-gatggatttgttctttgctcttgtcgcag------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23359341|gb|BU647161.1|BU647161
EST:     CTCACCATGCTCATGTCCGACTCGCTGGGAGGCAACGCCAAGACGCTCAT                         GTTCGTCAACGTGTCGCCCACGGACGCCAACATTGATGAGACGCAGAACTC
genomic: CTCACCATGCTCATGTCCGACTCGCTGGGAGGCAACGCCAAGACGCTCATgtgcgtggct ... ctggcgacagGTTCGTCAACGTGTCGCCCACGGACGCCAACATTGATGAGACGCAGAACTC