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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGACGTGCTGGGCATGAGCCAGCAGGAGGTCATGTCGGCGCAGTCGGACCTGGCGGAGCAGGCCTACAAGGCGCAGGCGTCAGAGGTGATGCGCAGCGgtgagcgggcgcgtgctgggaggaggggtgggagggagggggtgggggcggaggggaaggaggggatgggagaggaaggaaggggaggcgggtggtggtg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP08017
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161799144|gb|FC084938.1|FC084938
EST:     GTCAGAGGTGATGCGCAGCG                         GCCCTCTGAACGAGGAGAAGATCCAGTACCTGGACGAGATGCGCACACAGC
genomic: GTCAGAGGTGATGCGCAGCGgtgagcgggc ... caccccgcagGCCCTCTGAACGAGGAGAAGATCCAGTACCTGGACGAGATGCGCACACAGC
EST: gi|10787662|gb|AV644334.1|AV644334
EST:     CCTGGCGGAGCAGGCCTACAAGGCGCAGGCGTCAGAGGTGATGCGCAGCG                         GCCCTCTGAACGAGGAGAAGATCCAGTACCTGGACGAGATGCGCACACAGC
genomic: CCTGGCGGAGCAGGCCTACAAGGCGCAGGCGTCAGAGGTGATGCGCAGCGgtgagcgggc ... caccccgcagGCCCTCTGAACGAGGAGAAGATCCAGTACCTGGACGAGATGCGCACACAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGGACGTGCTGGGCATGAGCCAGCAGGAGGTCATGTCGGCGCAGTCGGACCTGGCGGAGCAGGCCTACAAGGCGCAGGCGTCAGAGGTGATGCGCAGCGgtgagcgggcgcgtgctgggaggaggggtgggagggagggggtgggggcggaggggaaggaggggatgggagaggaaggaaggggaggcgggtggtggtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggt