1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGATGAACGTCAGCAACTACGCCGTGGGCGCCACCTTCCCCACCGCCTTCGACAAGGGCCTCAACTCCTCCATCAACAGCAACCTCAAGACGTTGACCAAgtgggtgcacggggtcgggacggagcggggcgggggaaacgcgttgtcatacagcttcacgccttagctcattgcgttatccacacgtgtcgccggcacctcacgcgtgcgcagctcattgcgttcgccgtaactgccgttccctcgcatcaatctgccccctgacatttcttccatcctccatccgcctctccgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDO99485 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GACAAGGGCCTCAACTCCTCCATCAACAGCAACCTCAAGACGTTGACCAA CATGTTTAACACCAAGACTATCGGCTACGTTGACCCCTACCAGCTGGGCCAEST: gi|10772867|gb|AV623690.1|AV623690
genomic: GACAAGGGCCTCAACTCCTCCATCAACAGCAACCTCAAGACGTTGACCAAgtgggtgcac ... ctccgcgcagCATGTTTAACACCAAGACTATCGGCTACGTTGACCCCTACCAGCTGGGCCA
EST: GACAAGGGCCTCAACTCCTCCATCAACAGCAACCTCAAGACGTTGACCAA CATGTTTAACACCAAGACTATCGGCTACGTTGACCCCTACCAGCTGGGCCAEST: gi|16430417|gb|BI995643.1|BI995643
genomic: GACAAGGGCCTCAACTCCTCCATCAACAGCAACCTCAAGACGTTGACCAAgtgggtgcac ... ctccgcgcagCATGTTTAACACCAAGACTATCGGCTACGTTGACCCCTACCAGCTGGGCCA
EST: GACAAGGGCCTCAACTCCTCCATCAACAGCAACCTCAAGACGTTGACCAA CATGTTTAACACCAAGACTATCGGCTACGTTGACCCCTACCAGCTGGGCCA
genomic: GACAAGGGCCTCAACTCCTCCATCAACAGCAACCTCAAGACGTTGACCAAgtgggtgcac ... ctccgcgcagCATGTTTAACACCAAGACTATCGGCTACGTTGACCCCTACCAGCTGGGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGAACGTCAGCAACTACGCCGTGGGCGCCACCTTCCCCACCGCCTTCGACAAGGGCCTCAACTCCTCCATCAACAGCAACCTCAAGACGTTGACCAAgtgggtgcacggggtcgggacggagcggggcgggggaaacgcgttgtcatacagcttcacgccttagctcattgcgttatccacacgtgtcgccggcacctcacgcgtgcgcagctcattgcgttcgccgtaactgccgttccctcgcatcaatctgccccctgacatttcttccatcctccatccgcctctccgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC