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CAAGCGCGCGCTCAGCTACCCCATCAAGCTCATCGCCAACAACGCCGGCACCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggcggaggggctgcgtcgggggggggggggtgtgttgcaaattccagcccaaacgcaaccaaaccaagctaaaacgagcgcagcacaggggga...
species | Chlamydomonas reinhardtii |
transcript | EDP03982 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG TACTACGGCTACAACGCCGCCACCGACACCEST: gi|10778875|gb|AV635555.1|AV635555
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACC
EST: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCCEST: gi|16435375|gb|BM000595.1|BM000595
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: ACATCGACCAGCCG TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCCEST: gi|8828679|gb|BE212409.1|BE212409
genomic: ACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCCEST: gi|9460610|gb|BE453322.1|BE453322
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCCEST: gi|22052894|gb|BQ810459.1|BQ810459
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCCEST: gi|22060239|gb|BQ813728.1|BQ813728
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
EST: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCG TACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
genomic: CCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggc ... cgccgtgcagTACTACGGCTACAACGCCGCCACCGACACCTTCGAGGACCTGATGGAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCGCGCGCTCAGCTACCCCATCAAGCTCATCGCCAACAACGCCGGCACCAACGGCTCCGTGGTCATGCAGCGCGTCATGGACAACATCGACCAGCCGgtgcgtgggcggaggggctgcgtcgggggggggggggtgtgttgcaaattccagcccaaacgcaaccaaaccaagctaaaacgagcgcagcacaggggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacga