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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGAGCTGTCTGCGGGCATGGCGCTGCTGGGCCCCGTGGAGGAGAAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcggggcggggcgggcgggcgggcgggcggctgagggcgggcgctggggctgcttcccgtgcagctggggcgggatcctgcgggggatgcgtgcag...

Basic information

species Chlamydomonas reinhardtii
transcript EDP02072
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14228434|gb|BG847250.1|BG847250
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|23365053|gb|BU652873.1|BU652873
EST:     AAGTACATCAAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|16431747|gb|BI996973.1|BI996973
EST:     GACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: GACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|16433637|gb|BI998863.1|BI998863
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTGGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|23358398|gb|BU646218.1|BU646218
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|23367838|gb|BU655656.1|BU655656
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|15373415|gb|BI532841.1|BI532841
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACTGCACCAA                         GGACCATGCGTTCATCA
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCA
EST: gi|23365705|gb|BU653525.1|BU653525
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTATGACGCCACCACGCACTTTGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|16431543|gb|BI996769.1|BI996769
EST:     GTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: GTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|15695447|gb|BI719752.1|BI719752
EST:     AAGTACATCGAGGTGCGCGACATTTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGGTACGACGCCCCCACGCACTTCGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|22050063|gb|BQ809048.1|BQ809048
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|16072684|gb|BI874680.1|BI874680
EST:     TACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: TACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|23367696|gb|BU655514.1|BU655514
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|14230194|gb|BG849010.1|BG849010
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC
EST: gi|16437589|gb|BM002809.1|BM002809
EST:     AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAA                         GGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTTGAGAC
genomic: AAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcgggg ... ccgcccccagGGACCAGGCGTTCATCAGCAAGGGCTACGACGCCACCACGCACTTCGAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGGAGCTGTCTGCGGGCATGGCGCTGCTGGGCCCCGTGGAGGAGAAGTACATCGAGGTGCGCGACATCTGCGAGCCGCTGGACGACGGCACCAAgtgagcggggcggggcgggcgggcgggcgggcggctgagggcgggcgctggggctgcttcccgtgcagctggggcgggatcctgcgggggatgcgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgc