1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
CACGCTCACGCCGCGCCAGCGCATCTCCGTGTACCGCGAGATGTACCGCCTCAAGCAGCTGGGCCCGGGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCGgtgagcgagagggggggccaggattacggcggcgggagaggggctcgtgcggggatttggggctgcgggttgtttgggagcaacgcggttttgtgcatggtggactatggtatgcgtttcctgtgtcttcgcttcttgcaccctgtccctcacaccacaatacatcaccacctctcccctccccacaccgccccacag
species | Chlamydomonas reinhardtii |
transcript | EDP01639 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCG GCCATGAGCAGCTCGTACGCCTACGACGGCGAGCAGACGTGCGCGGCGGACEST: gi|15702666|gb|BI726971.1|BI726971
genomic: GGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCGgtgagcgaga ... cgccccacagGCCATGAGCAGCTCGTACGCCTACGACGGCGAGCAGACGTGCGCGGCGGAC
EST: TCAAGCAGCTGGGCCCGGGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCG GCCATGAGCAGCTCGTACGCCTACGACGGCGAGCAGACGTGCGCGGCGGACEST: gi|6543535|gb|AV389319.1|AV389319
genomic: TCAAGCAGCTGGGCCCGGGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCGgtgagcgaga ... cgccccacagGCCATGAGCAGCTCGTACGCCTACGACGGCGAGCAGACGTGCGCGGCGGAC
EST: TCAAGCAGCTGGGCCCGGGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCG GCCATGAGCAGCTCGTACGCCTACGACGGCGAGCAGACGTGCGCGGCGGACEST: gi|49468369|gb|BP096230.1|BP096230
genomic: TCAAGCAGCTGGGCCCGGGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCGgtgagcgaga ... cgccccacagGCCATGAGCAGCTCGTACGCCTACGACGGCGAGCAGACGTGCGCGGCGGAC
EST: TCAAGCAGCTGGGCCCGGGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCG GCCATGAGCAGCTCGTACGCCTACGACGGCGAGCAGACGTGCGCGGCGGAC
genomic: TCAAGCAGCTGGGCCCGGGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCGgtgagcgaga ... cgccccacagGCCATGAGCAGCTCGTACGCCTACGACGGCGAGCAGACGTGCGCGGCGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGCTCACGCCGCGCCAGCGCATCTCCGTGTACCGCGAGATGTACCGCCTCAAGCAGCTGGGCCCGGGCGCCAGCGAGGAGGAGAAGAAGCAGCTGGCGgtgagcgagagggggggccaggattacggcggcgggagaggggctcgtgcggggatttggggctgcgggttgtttgggagcaacgcggttttgtgcatggtggactatggtatgcgtttcctgtgtcttcgcttcttgcaccctgtccctcacaccacaatacatcaccacctctcccctccccacaccgccccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG