1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CACTGTGCCCGGCGACGTGAGCGCGCTGGTGCCCGGCGGCCTGCGCATGGGCTCGCCTGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAGgtgggcgcggctgcgttgtgaggaacagacgaaaggggaggtgggcgcggctgcgttgcgaggaacagacgaaaggggaggcctagcgctgccggcgtgcatcagacgtacatgagctcatgctgttctgcttggtgcgtccttcctacgccgagcag
species | Chlamydomonas reinhardtii |
transcript | EDO97448 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GCTCGCCTGCCCTCACCTTGCGCGGGTTTGTGGAGAAAGACTTCGAGCAG GTGGCTGAGTTTTGTG-ACCGGGCCGTGAACATCGCGGTGGACCEST: gi|161796862|gb|FC083218.1|FC083218
genomic: GCTCGCCTGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAGgtgggcgcgg ... cgccgagcagGTGGCTGAGTTT-GTGGACCGCGCCGTGAACATCGCGGTGGACC
EST: GCTCGCCCGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAG GTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTGAAGAAGEST: gi|23363124|gb|BU650944.1|BU650944
genomic: GCTCGCCTGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAGgtgggcgcgg ... cgccgagcagGTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTCAAGAAG
EST: AGGACTTCGAGCAG GTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTCAAGAAGEST: gi|15368219|gb|BI527645.1|BI527645
genomic: AGGACTTCGAGCAGgtgggcgcgg ... cgccgagcagGTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTCAAGAAG
EST: GCTCGCCTGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAG GTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTCAAGAAGEST: gi|23363366|gb|BU651186.1|BU651186
genomic: GCTCGCCTGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAGgtgggcgcgg ... cgccgagcagGTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTCAAGAAG
EST: GCTCGCCTGCCCTCACCTAGCGCGGCTTTGTGGAGAAGGACTTCGAGCAG GTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTCAAGAAGEST: gi|161817251|gb|FC104090.1|FC104090
genomic: GCTCGCCTGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAGgtgggcgcgg ... cgccgagcagGTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTCAAGAAG
EST: GCTCGCCCGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAG GTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTGAAGAAG
genomic: GCTCGCCTGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAGgtgggcgcgg ... cgccgagcagGTGGCTGAGTTTGTGGACCGCGCCGTGAACATCGCGGTGGACCTCAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTGTGCCCGGCGACGTGAGCGCGCTGGTGCCCGGCGGCCTGCGCATGGGCTCGCCTGCCCTCACCTCGCGCGGCTTTGTGGAGAAGGACTTCGAGCAGgtgggcgcggctgcgttgtgaggaacagacgaaaggggaggtgggcgcggctgcgttgcgaggaacagacgaaaggggaggcctagcgctgccggcgtgcatcagacgtacatgagctcatgctgttctgcttggtgcgtccttcctacgccgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG