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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTCGCTGTACGAGGAGGCGCCCGGCATGGACGTGTACCGGCCCGACCAGGTCACGCCCATCCCCAACTTTTTCCTTGCGGGCTCCTACACCAAGCAGgtgagaggggatatgcgcgtcgtggccgggagcaatgcaagcgcggaagccgctgtgaacgcttggtagacacagtcccgccctgccacgttaattatgtacgggctcggcaagtcgcgactctcactcgcttgcctgtcacccgccgcgcccgctcacgcacgcgcttgcgtccttttcacgcatctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07040
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP07040 (Chlamydomonas reinhardtii), 5'ss of exon 13
lower sequence: PP1S277_10V6.2 (Physcomitrella patens), 5'ss of exon 10
GCAGTCGCTGTACGAGGAGGCGCCCGGCATGGACGTGTACCGGCCCGACCAGGTCACGCCCATCCCCAACTTTTTCCTTGCGGGCTCCTACACCAAGCAGgtgagaggggatatgcgcgtcgtggccgggagcaatg--caagcgcggaagccgc-tgtgaacgcttggtagacacagtcccgccctgccacgttaattatgtacgggctcggcaagtcgcgactctcactcgcttgcctgtcacccgccgcgcccgctcacgcacgcgcttgcgtccttttcacgcatctgcag
||||||  |||||   || || || ||||||||||||| ||| || ||||||   || ||| || ||||||| |||||| | || |||||||||||||||||  |     |    |      | |    ||  | |   ||  ||||  ||  |  | |    | |   |  ||  | || |  | | |    ||   |  |                                                                                             
GCAGTCATTGTACCGTGAAGCACCAGGCATGGACGTGTTCCGACCTGACCAGAAGACTCCCGTCTCCAACTTCTTCCTTTCAGGGTCCTACACCAAGCAGgtacgctactactcacctaatattgtaaagaagatttttcatacgcgttagtagagtatttgtgttgaatgtacg-aatctcatcttac-gtatttgctccg---------------------------------------------------------------------------------------------

upper sequence: EDP07040 (Chlamydomonas reinhardtii), 5'ss of exon 13
lower sequence: PP1S211_145V6.1 (Physcomitrella patens), 5'ss of exon 13
GCAGTCGCTGTACGAGGAGGCGCCCGGCATGGACGTGTACCGGCCCGACCAGGTCACGCCCATCCCCAACTTTTTCCTTGCGGGCTCCTACACCAAGCAGgtgagaggggatatgcgcgtcgtggccgggagcaatgcaagcgcggaagccgctgtgaacgcttggtagacacagtcccgccctgccacgttaattatgtacgggctcggcaagtcgcgactctcactcgcttgcctgtcacccgccgcgcccgctcacgcacgcgcttgcgtccttttcacgcatctgcag
 |||||  | |||   || || ||||||||||||  || |||||| || ||    || ||  || |||||||||||||  | ||||||||||||||||||||       |  |||     |    |    |||||    |     |||||     |||   || |  |     |     |  |||    |   | |||  || ||                                                                                       
TCAGTCATTATACCGTGAAGCTCCCGGCATGGACCCGTTCCGGCCTGATCAAAAGACCCCGGTCTCCAACTTTTTCCTCTCAGGCTCCTACACCAAGCAGgtacagcatggcatgactcccacttct---agcaa---gatttttgaagcttacttgataactcg-caagtttatggtgg--ctgaagaggccactatacactggagat-----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15699185|gb|BI723490.1|BI723490
EST:     AGGTCACGCCCATCCCCAACTTTTTCCTTGCGGGCTCCTACACCAAGCAG                         GACTACATTGACTCCATGGAGGGTGCCACCCTGTCCGGCCGCCAGTGCGCC
genomic: AGGTCACGCCCATCCCCAACTTTTTCCTTGCGGGCTCCTACACCAAGCAGgtgagagggg ... gcatctgcagGACTACATTGACTCCATGGAGGGTGCCACCCTGTCCGGCCGCCAGTGCGCC
EST: gi|15699184|gb|BI723489.1|BI723489
EST:     AGGTCACGCCCATCCCCAACTTTTTCCTTGCGGGCTCCTACACCAAGCAG                         GACTACATTGACTCCATGGAGGGTGCCACCCTGTCCGGCCGCCAGTGCGCC
genomic: AGGTCACGCCCATCCCCAACTTTTTCCTTGCGGGCTCCTACACCAAGCAGgtgagagggg ... gcatctgcagGACTACATTGACTCCATGGAGGGTGCCACCCTGTCCGGCCGCCAGTGCGCC