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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTGCGCGTGGAGGACGCCCTGAACGCCACCAAGGCCGCTGTGGAGGAGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggcggggttcacggcgcgcggggggcggggtggggctggggaaggtggagaggcgagggcggggaatggggagctgacaagggcgaacgggcg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP03982
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22052891|gb|BQ810458.1|BQ810458
EST:     AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG                         GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: gi|16435777|gb|BM000997.1|BM000997
EST:     AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG                         GTGGACTCCATC
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATC
EST: gi|10778875|gb|AV635555.1|AV635555
EST:     AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG                         GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: gi|8828679|gb|BE212409.1|BE212409
EST:     AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG                         GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: gi|22068172|gb|BQ818111.1|BQ818111
EST:     AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG                         GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: gi|10770164|gb|AV620989.1|AV620989
EST:     AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG                         GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: gi|49465911|gb|BP093824.1|BP093824
EST:     AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG                         GTGGACTCCATCAAGGAGACCCTTT
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTT
EST: gi|22052894|gb|BQ810459.1|BQ810459
EST:     AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG                         GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
EST: gi|22060239|gb|BQ813728.1|BQ813728
EST:     AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAG                         GTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC
genomic: AGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggc ... acacgcgcagGTGGACTCCATCAAGGAGACCCTTTCCAACGAGGAGCAGAAGATGGGCGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGCTGCGCGTGGAGGACGCCCTGAACGCCACCAAGGCCGCTGTGGAGGAGGGCATTGTCATCGGTGGTGGCTGCACGCTGCTGCGCCTCAGCCAGAAGgtgcgcgggcggggttcacggcgcgcggggggcggggtggggctggggaaggtggagaggcgagggcggggaatggggagctgacaagggcgaacgggcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggggct