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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCACAGCGTGCAGATCATCCTGCCCCAGAAGCAGACCGGCCGCAAGTCCGACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGGgtgagcgagcgggggagggtgctgctggttccgtgactaggaagcgtggggcaggccgagacaggaaacaaaggcacaggttccttgcagtcgcgttgcc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP02072
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14228434|gb|BG847250.1|BG847250
EST:     TTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGG                         ACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
genomic: TTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGGgtgagcgagc ... cctcacacagACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
EST: gi|23358398|gb|BU646218.1|BU646218
EST:     ACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGG                         ACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
genomic: ACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGGgtgagcgagc ... cctcacacagACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
EST: gi|15373415|gb|BI532841.1|BI532841
EST:     CGACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGG                         ACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
genomic: CGACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGGgtgagcgagc ... cctcacacagACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
EST: gi|23365054|gb|BU652874.1|BU652874
EST:     CGACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGG                         ACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
genomic: CGACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGGgtgagcgagc ... cctcacacagACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
EST: gi|22050063|gb|BQ809048.1|BQ809048
EST:     GCTGCTCCTACGCGCACAACGTGGCTGCCAAGG                         ACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
genomic: GCTGCTCCTACGCGCACAACGTGGCTGCCAAGGgtgagcgagc ... cctcacacagACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
EST: gi|14230194|gb|BG849010.1|BG849010
EST:     CGACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGG                         ACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG
genomic: CGACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGGgtgagcgagc ... cctcacacagACAAGTGGCTGGCGTTCGTGAGCACCACCATGGAGACCGCCAACCCTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCACAGCGTGCAGATCATCCTGCCCCAGAAGCAGACCGGCCGCAAGTCCGACATGTACGTGTTCTGCTGCTCCTACGCGCACAACGTGGCTGCCAAGGgtgagcgagcgggggagggtgctgctggttccgtgactaggaagcgtggggcaggccgagacaggaaacaaaggcacaggttccttgcagtcgcgttgcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa