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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGAGCTGTTTAACTACCTGCCGCTCGCGGCCATCATCGAGGGCAAGATCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAGgtgcggatgatggcacgacggcaggccgaggggagcgacaagtgcgctcaggcatggtgcagctgttgcgcacgttagcattatggactgttgtcaaaagctttcctttactgttgctgggtgttcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09505
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23363266|gb|BU651086.1|BU651086
EST:     TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAG                         ATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG
genomic: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAGgtgcggatga ... gggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG
EST: gi|23366408|gb|BU654228.1|BU654228
EST:     TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAG                         ATCTCCGAGCTGAAGCGCCCCATCACCA
genomic: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAGgtgcggatga ... gggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCA
EST: gi|161822256|gb|FC110356.1|FC110356
EST:     TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAG                         ATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG
genomic: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAGgtgcggatga ... gggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG
EST: gi|15697986|gb|BI722291.1|BI722291
EST:     TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAG                         ATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG
genomic: TCCTGTGCATGCACGGTGGCATTGGCCGCTGCATCCACAAGATCGACCAGgtgcggatga ... gggtgttcagATCTCCGAGCTGAAGCGCCCCATCACCATGGAGGACGGCGGCCCGGTGCTG