1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGCCCACGCCCTGCGCCACCACCGACGCCATCTTCTACGCCGGCACCGGCATGCTGCTGTGCCGCTCGGAGGACAAGgtgcgtgctggctgcccgcgcctccttcaatgccatgcacgcactgcgctccatcgcgtccccgcattccaaccactgctacagtgtgggccctgattag...
species | Chlamydomonas reinhardtii |
transcript | EDP08940 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCATCTTCTACGCCGGCACCGGCATGCTGCTGTGCCGCTCGGAGGACAAG GTGACGCTGTTCGACATCCAGCAGCGCTCCTCCATGGCCGACCTGGCCACGEST: gi|49467910|gb|BP095771.1|BP095771
genomic: CCATCTTCTACGCCGGCACCGGCATGCTGCTGTGCCGCTCGGAGGACAAGgtgcgtgctg ... ctgcgcccagGTGACGCTGTTCGACATCCAGCAGCGCTCCTCCATGGCCGACCTGGCCACG
EST: CATCTTCTACGCCGGCACCGGCATGCTGCTGTGCCGCTCTGGAGGACAAG GTGACGCTGTTCGACATCCAGCAGCTGCTCCTCCATGGCCGACCTGGCCAC
genomic: CATCTTCTACGCCGGCACCGGCATGCTGCTGTGCCGCTC-GGAGGACAAGgtgcgtgctg ... ctgcgcccagGTGACGCTGTTCGACATCCAGCAGC-GCTCCTCCATGGCCGACCTGGCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCCACGCCCTGCGCCACCACCGACGCCATCTTCTACGCCGGCACCGGCATGCTGCTGTGCCGCTCGGAGGACAAGgtgcgtgctggctgcccgcgcctccttcaatgccatgcacgcactgcgctccatcgcgtccccgcattccaaccactgctacagtgtgggccctgattag
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg