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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCGGTCGGCTCAAGATCATTGACCGCAAGAAGAACATCTTCAAGCTGGCGCAGGGCGAGTACATTGCGCCAGAGAAGATCGAGAACACCTACACGCGgtgagagtagcatagtgcgagaggggcggggcggggcagttagggtcgctgctaggtttcggtccgtgtctaaggcggctgggctaatgcggctggatttgtgccgacccagtccccgctcaacaccccgcccctctgcgcccgcccccccaccccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05282
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP05282 (Chlamydomonas reinhardtii), 5'ss of exon 11
lower sequence: PP1S408_23V6.1 (Physcomitrella patens), 5'ss of exon 21
AGGGCGGTCGGCTCAAGATCATTGACCGCAAGAAGAACATCTTCAAGCTGGCGCAGGGCGAGTACATTGCGCCAGAGAAGATCGAGAACACCTACA--CGCGgtgaga--gtagcatagtgcgagaggggcggggcggggcagttagggtcgctgctaggtttcggtccgtgt---ctaaggcggctg-ggctaatgcggctggatttgtgccgacccagtccccgctcaacaccccgcccctctgcgcccgcccccccaccccgcag
                                ||||| ||||| ||| |||| || || ||||||||||| || ||||||||||||||   ||||   ||| ||       || || ||||  | |     ||   |      ||      |  |  |   |||  | | |||   ||||    | ||   ||  ||  | ||  ||      ||     |   |     | |                                   
--------------------------------AAGAATATCTTTAAGTTGGCTCAAGGAGAGTACATTGCCCCGGAGAAGATCGAGAATGTCTACCTTCGCAGTCGTTTCATAACACAGTGTTACATACATGgtatgttcattttttaaatggaggaactcttcatttcttgtggtctaaacaagttgcaactggtgtagatgacttaa----gatttttttttcatctgaaatga--------------------------------

upper sequence: EDP05282 (Chlamydomonas reinhardtii), 5'ss of exon 11
lower sequence: PP1S33_126V6.1 (Physcomitrella patens), 5'ss of exon 22
AGGGCGGTCGGCTCAAGATCATTGACCGCAAGAAGAACATCTTCAAGCTGGCGCAGGGCGAGTACATTGCGCCAGAGAAGATCGAGAACACCTACACGCGgtgagagta----gcatagtgcgagaggggcggggcg---gggcagttagggtcgctgctaggtttcggtccgtgtctaaggcggctg-ggctaatgcggctggatttgtgccgacccagtccccgctcaacaccccgcccctctgcgcccgcccccccaccccgcag
                                ||||| ||||||||| |||| ||||| |||||||||||||| |||||||| ||||||  ||||  |||  |   ||     ||| |||||   |     || |||      || |||  |  |        | ||  |   |   | |   |  || || | |  |  |  | ||  ||  |     |   |   | || |                                   
--------------------------------AAGAATATCTTCAAGTTGGCTCAGGGAGAGTACATTGCGCCCGAGAAGATTGAGAACGTCTACCTGCGAAGTCGGTTCATTGCACAGTGCTTTATTCATGgtgcgttcattcaattaatggaggcatcccttctcattgtctcagtcatctgcttgtggttgaaacaccatggttactggggttgtgggtgct--ttaagag----------------------------------

upper sequence: EDP05282 (Chlamydomonas reinhardtii), 5'ss of exon 11
lower sequence: EFJ33980 (Selaginella moellendorffii), 5'ss of exon 20
AGGGCGGTCGGCTCAAGATCATTGACCGCAAGAAGAACATCTTCAAGCTGGCGCAGGGCGAGTACATTGCGCCAGAGAAGATCGAGAACACCTACACGCGgtgagagtagcatagtgcgagaggggcggggcggggcagttagggtcgctgctaggtttcggtccgtgtctaaggcggctgggctaatgcggctggatttgtgccgacccagtccccgctcaacaccccgcccctctgcgcccgcccccccaccccgcag
                                |||||||| || ||||| || ||||| || ||||| |||||||||||||| |||||   |||       | | || |   | ||         ||   | |   |   || |||     | |  ||| | |  |||||||  |  || |   | |  |   |   || |    |   |||                                                
--------------------------------AAGAACATTTTTAAGCTTGCACAGGGTGAATACATAGCGCCAGAGAAGATTGAGAATGTCTATC----ATAAAAGCAAGTTCGTT--------GCTCAGTGTTTCGTCTACGgtgagaacaa--ttttgttttgtgtctagcg-agcggttttgacacaattctcttcg-attgtaacag------------------------------------------------